1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtatgatggtcaaatacaaatcacggcctatttctttctctttctatacttgaagttaatgtctctttggcagGTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTG
species | Zea mays |
transcript | GRMZM2G128688_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG GTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAGEST: gi|71428851|gb|DR809901.1|DR809901
genomic: CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAGgtatgatggt ... tctttggcagGTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAG
EST: CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG GTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAGEST: gi|32931855|gb|CF036667.1|CF036667
genomic: CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAGgtatgatggt ... tctttggcagGTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAG
EST: CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGGG GTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAG
genomic: CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAGgtatgatggt ... tctttggcagGTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAG
aatcacggcctatttctttctctttctatacttgaagttaatgtctctttggcagGTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTG
agttaat putative branch site (score: 4)
tgtctcttt CT-rich tract
tatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatggtcaaatacaaatcacggcctatttctttctctttctatacttgaagttaatgtctctttggcagGTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG