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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacctctaacaatggaagatatggatcattgtctacaaagtagattatctccattgttatgtctgatctcaagcatttccccattgtgctggatatacagGCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTATCCGAATCTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTC

Basic information

species Zea mays
transcript GRMZM2G128114_T03
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128114_T01 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os02g07760.1 (Oryza sativa), 3'ss of exon 17
tacctctaacaatggaaga--tatggatcattgtctacaaagtagattatctccattgttatgtctgatc--tcaagcatttccccatt--gtgctggatatacagGCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTATCCGAATCTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTC
    | ||  |||| |     ||| | |   |||  | ||  |    | | ||| |||||   ||  |||  ||||| |||  |   ||   || |  || | |||||||||||||||| || || || ||||||||||||||||||||||| || || ||| |||||||||| ||  |||| || || ||||||||||| || ||
----tgtagaaatgcatcccctattgctagctgtaca-aacatgacatgtttcccttgttccttccaatccctcaagaattatcttcttcaatgattaat-tgcagGCTTAGCTGCATATATCTTCACAAAGAGCATACCTCGTTCATGGCGCGTTTCGGAAGCTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|194717149|gb|FK934302.1|FK934302
EST:     GTTCAAAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACACAG                         GCTTAGCTGCATACATTTTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
genomic: ATTCAAAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAGgttcattgac ... ggatatacagGCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
EST: gi|84980453|gb|DW530802.1|DW530802
EST:     ATTCAAAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAG                         GCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
genomic: ATTCAAAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAGgttcattgac ... ggatatacagGCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
EST: gi|78107120|gb|DV525538.1|DV525538
EST:     ATTCAAAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAG                         GCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
genomic: ATTCAAAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAGgttcattgac ... ggatatacagGCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
EST: gi|149000517|gb|EE037699.2|EE037699
EST:     ATTCAAAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAG                         GCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
genomic: ATTCAAAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAGgttcattgac ... ggatatacagGCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
EST: gi|32856352|gb|CD996033.1|CD996033
EST:     ATTCAAAACTGAGGAAGAAGCTGTCCATATGGCCAACGATACAAACGCAG                         GCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
genomic: ATTCAAAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAGgttcattgac ... ggatatacagGCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
EST: gi|211258235|gb|FL463467.1|FL463467
EST:     AAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAG                         GCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT
genomic: AAACTGAGGAAGAAGCAGTCCATATGGCCAACGATACAAACGCAGgttcattgac ... ggatatacagGCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctccattgttatgtctgatctcaagcatttccccattgtgctggatatacagGCTTAGCTGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTATCCGAATCTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTC
               gtctgat  putative branch site (score: 4)
       attgttat  TA-rich tract