1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gaattagcatggttgaagaagcctggttttaatttatcttcaaagttcatgtataaattttgtgtgcctatctaaatcctgccatgtcatatttctgcagATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTATCATCTAATTTTGAAACGACAACTGAGTTGCTTAATTCAAACACACAAGATGCTACCC
species | Zea mays |
transcript | GRMZM2G122750_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGGTGTGAAGTTGTATTCTGCATCATCTGCTGAAGAAGTCTTGCAG ATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTATCATCTAATEST: gi|78090128|gb|DV518502.1|DV518502
genomic: CTTGGGGTGTGAAGTTGTATTCTGCATCATCTGCTGAAGAAGTCTTGCAGgttgcattgc ... atttctgcagATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTATCATCTAAT
EST: CTTGGGGTGTGAAGTTGTATTCTGCATCATCTGCTGAAGAAGTCTTGCAG ATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTATCATCTAATEST: gi|78084770|gb|DV513163.1|DV513163
genomic: CTTGGGGTGTGAAGTTGTATTCTGCATCATCTGCTGAAGAAGTCTTGCAGgttgcattgc ... atttctgcagATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTATCATCTAAT
EST: CTTGGGGTGTGAAGTTGTATTCTGCATCATCTGCTGAAGAAGTCTTGCAG ATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTATCATCTAATEST: gi|78090129|gb|DV518503.1|DV518503
genomic: CTTGGGGTGTGAAGTTGTATTCTGCATCATCTGCTGAAGAAGTCTTGCAGgttgcattgc ... atttctgcagATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTATCATCTAAT
EST: CTTGGGGTGTGAAGTTGTATTCTGCATCATCTGCTGAAGAAGTCTTGCAG ATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTAT
genomic: CTTGGGGTGTGAAGTTGTATTCTGCATCATCTGCTGAAGAAGTCTTGCAGgttgcattgc ... atttctgcagATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTAT
ttcatgtataaattttgtgtgcctatctaaatcctgccatgtcatatttctgcagATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTATCATCTAATTTTGAAACGACAACTGAGTTGCTTAATTCAAACACACAAGATGCTACCC
atctaaa putative branch site (score: 36)
tatttct putative PPT
tataaattttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattagcatggttgaagaagcctggttttaatttatcttcaaagttcatgtataaattttgtgtgcctatctaaatcctgccatgtcatatttctgcagATGCTTAGTGTGCTGGAAAGTGCAATAAAGCGAGATTACTTATCATCTAATTTTGAAACGACAACTGAGTTGCTTAATTCAAACACACAAGATGCTACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - gcatggt
- - - - - - - - - -agcctgg
- - - - - - - - - - - - - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgcc