1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaaagtttacagttagaccttctaatcttaacaatttcaaccagaccttgttgtagtgcatagaatctactttcacgtgcgagtaaatggtctaatattgaggaattgtctgacacttcatagttgttaacatctttttttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGAAGAAGCAGTTCATATGGCCAACGATACAAACGCAG
species | Zea mays |
transcript | GRMZM2G119482_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATCCCGTTCAAAACTGAGGAEST: gi|78179569|gb|DV549942.1|DV549942
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaagttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
EST: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGAEST: gi|5608478|gb|AI902055.1|AI902055
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaagttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
EST: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGAEST: gi|6827661|gb|AW331304.1|AW331304
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaagttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
EST: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGAEST: gi|76921993|gb|DV168796.1|DV168796
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaagttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
EST: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGAEST: gi|76286305|gb|DV025873.1|DV025873
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaagttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
EST: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGAEST: gi|60348461|gb|DN215434.1|DN215434
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaagttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
EST: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGAEST: gi|60341947|gb|DN208920.1|DN208920
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaagttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
EST: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaagttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
atattgaggaattgtctgacacttcatagttgttaacatctttttttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGAAGAAGCAGTTCATATGGCCAACGATACAAACGCAG
tgttaac putative branch site (score: 290)
catctttttttcattt CT-rich tract
ttaacatcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtttacagttagaccttctaatcttaacaatttcaaccagaccttgttgtagtgcatagaatctactttcacgtgcgagtaaatggtctaatattgaggaattgtctgacacttcatagttgttaacatctttttttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGAAGAAGCAGTTCATATGGCCAACGATACAAACGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC