1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tgatctgatatactctcggtactagttcacacgctatagtgtagcgcgcgagcagtgcctccctgacagtatgattatccgtgtctgtttgaaaacatagAAACGGAAACGTAACGAAGACACCAAGAGCTCGACGCCTGCTGACACACCGGCAGAAGCCACATACAACATGCTGAAACGGAAG
species | Zea mays |
transcript | GRMZM2G109651_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGGCAGCTGAATTGGCAGCTAGAGGGATTGTTGTGGAAGAGGGAAAGAAA AAACGGAAACGTAACGAAGACACCAAGAGCTCGACGCCTGCTGACACACCGEST: gi|76018272|gb|DT945442.1|DT945442
genomic: TGGCAGCTGAATTGGCAGCTAGAGGGATTGTTGTGGAAGAGGGAAAGAAAgtaaggaaca ... gaaaacatagAAACGGAAACGTAACGAAGACACCAAGAGCTCGACGCCTGCTGACACACCG
EST: TTGGCAGCTAGAGGGATTGTTGTGGAAGAGGGAAAGAAA AAACGGAAACGTAACGAAGACACCAAGAGCTCGACGCCTGCTGACACACCGEST: gi|22545488|gb|BU097847.1|BU097847
genomic: TTGGCAGCTAGAGGGATTGTTGTGGAAGAGGGAAAGAAAgtaaggaaca ... gaaaacatagAAACGGAAACGTAACGAAGACACCAAGAGCTCGACGCCTGCTGACACACCG
EST: TGGCAGCTGAATTGGCAGCTAGAGGGATTGTTGTGGAAGAGGGAAAGAAA AAACGGAAACGTAACGAAGACACCAAGAGCTCGACGCCTGCTGACACACCG
genomic: TGGCAGCTGAATTGGCAGCTAGAGGGATTGTTGTGGAAGAGGGAAAGAAAgtaaggaaca ... gaaaacatagAAACGGAAACGTAACGAAGACACCAAGAGCTCGACGCCTGCTGACACACCG
gcgcgagcagtgcctccctgacagtatgattatccgtgtctgtttgaaaacatagAAACGGAAACGTAACGAAGACACCAAGAGCTCGACGCCTGCTGACACACCGGCAGAAGCCACATACAACATGCTGAAACGGAAG
ccctgac putative branch site (score: 131)
tatgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatctgatatactctcggtactagttcacacgctatagtgtagcgcgcgagcagtgcctccctgacagtatgattatccgtgtctgtttgaaaacatagAAACGGAAACGTAACGAAGACACCAAGAGCTCGACGCCTGCTGACACACCGGCAGAAGCCACATACAACATGCTGAAACGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
tgatctg
- - - - - - - - - - - - - -cacacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttt