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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttaacagactagtattctgctttgtacctaattcatttaggatattgttgttttacatgtgcttggttcatttgttttagTTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTGGAACTCTATCTACAATGAAATCTCATAGCAATGCATCCGCAAAATTAAA

Basic information

species Zea mays
transcript GRMZM2G108829_T03
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60349468|gb|DN216441.1|DN216441
EST:     ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTG                         TTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
genomic: ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTGgttagttaac ... tttgttttagTTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
EST: gi|78022750|gb|DV491137.1|DV491137
EST:     CCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTG                         TTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
genomic: CCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTGgttagttaac ... tttgttttagTTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
EST: gi|211496287|gb|FL041699.1|FL041699
EST:     ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTG                         TTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
genomic: ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTGgttagttaac ... tttgttttagTTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
EST: gi|32870331|gb|CF010013.1|CF010013
EST:     ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTG                         TTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
genomic: ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTGgttagttaac ... tttgttttagTTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
EST: gi|32788458|gb|CD940694.1|CD940694
EST:     ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTG                         TTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
genomic: ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTGgttagttaac ... tttgttttagTTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
EST: gi|67011156|gb|CO439905.1|CO439905
EST:     ACTTNCTGTCCGTCCAAAAGCTTCATCACTTNCTAGAACAC-TNCATGTG                         NTGGNATCAAAAGGAAATNCAGAGAACAGTGTGGCTAGAAGATTCTCAACT
genomic: ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTGgttagttaac ... tttgttttagTTGG-ATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACT
EST: gi|5325074|gb|AI783265.1|AI783265
EST:     ACTTCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTG                         TTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
genomic: ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTGgttagttaac ... tttgttttagTTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
EST: gi|5846886|gb|AI999969.1|AI999969
EST:     ACTTCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTG                         TTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG
genomic: ACTCCCTGTCCGTCCAAAAGCTTCATCACTTCCTAGAACACCTCCATGTGgttagttaac ... tttgttttagTTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctaattcatttaggatattgttgttttacatgtgcttggttcatttgttttagTTGGATCAAAAGGAAATTCAGAGAACAGTGTGGCTAGAAGATTCTCAACTGGAACTCTATCTACAATGAAATCTCATAGCAATGCATCCGCAAAATTAAA
 acctaat  putative branch site (score: 3)
                                             tttgtttt  putative PPT
                atattgttgtttta  TA-rich tract