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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttagtcactagtctatcatgcaatgtgtttacaagttgtaaaatttatggttaaagttaccttcaaaagtttattgatctactaaacttttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG

Basic information

species Zea mays
transcript GRMZM2G101250_T02
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113701052|gb|EE678556.1|EE678556
EST:     GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG                         GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatggttaaagttaccttcaaaagtttattgatctactaaacttttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
                                   tactaaa  putative branch site (score: 1)
                                          cttttcttttc  CT-rich tract
                 ttcaaaagtttatt  TA-rich tract