1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tttagtcactagtctatcatgcaatgtgtttacaagttgtaaaatttatggttaaagttaccttcaaaagtttattgatctactaaacttttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
species | Zea mays |
transcript | GRMZM2G101250_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GTGGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|60358881|gb|DN225854.1|DN225854
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|148934268|gb|EC878291.2|EC878291
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|78121627|gb|DV540011.1|DV540011
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|40302924|gb|CK347311.1|CK347311
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|60358880|gb|DN225853.1|DN225853
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|9254603|gb|BE345056.1|BE345056
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: CAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|32834623|gb|CD974301.1|CD974301
genomic: CAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|32930313|gb|CF035125.1|CF035125
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|32833197|gb|CD972875.1|CD972875
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|78121626|gb|DV540010.1|DV540010
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTGCTGGAGCAAAG GGTTCGCCCTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAGEST: gi|91056340|gb|EB166758.1|EB166758
genomic: GTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
EST: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAG GGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
genomic: GTTGGTGGTGCAGCTTCTACAGCTGGCCTTGCACAAGTGCTGGAGCAAAGgtttgttaga ... ttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
ttatggttaaagttaccttcaaaagtttattgatctactaaacttttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
tactaaa putative branch site (score: 61)
cttttcttttc CT-rich tract
ttcaaaagtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagtcactagtctatcatgcaatgtgtttacaagttgtaaaatttatggttaaagttaccttcaaaagtttattgatctactaaacttttcttttcagGGTTCGCACTAAAATTTCAGCAAACCAATCTATTGAGAAAGTTGAG
- - - - - - - - tcatgca
- - - - - - - - - - - - tgtgttt