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...tctagttgcctagactagataagttcagtgaaatgcctagaggtactgcatctgcaaacttgcggggagatttatgcacttacattgtgtttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCGAACTGGCTGACAGCATGGGCCATTACAATGACGGCAAGCCTGATGTTGA
species | Zea mays |
transcript | GRMZM2G097768_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCGEST: gi|71772625|gb|DR970553.1|DR970553
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG ATCCTTCCTTGT-AACATCAAAAGCCTTGCTGGAEST: gi|193503179|gb|AM937591.1|AM937591
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCT-GTTAACATCAAGAGCCTTGCTGGA
EST: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
ctgcatctgcaaacttgcggggagatttatgcacttacattgtgtttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCGAACTGGCTGACAGCATGGGCCATTACAATGACGGCAAGCCTGATGTTGA
cacttac putative branch site (score: 215)
ttgtgtttcctttc CT-rich tract
agatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagttgcctagactagataagttcagtgaaatgcctagaggtactgcatctgcaaacttgcggggagatttatgcacttacattgtgtttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCGAACTGGCTGACAGCATGGGCCATTACAATGACGGCAAGCCTGATGTTGA
- - - tgcctag
- - - - - - - - - - - - - - tgaaatg
- - - - - - - - - - - - - - - - - - - - - gtactgc
- - - - - - - - - - - - - - - - - - - - - - - - -atctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcac