1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgggctctgctctgtgctggattcaacacccaccgaatcctgttacgacttaccacaccacaccgatgcaatcggtatcttcctttttcatttcaactgatggtccaataacaaccaccaaaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTTGCTGAAGACCTGGCTGAGGGGTGCTGTGATGTGGGTCCTAGGGAGCTT
species | Zea mays |
transcript | GRMZM2G085747_T04 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGACGACGAAATTCGAAAAGGAATCCTCCTCTCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|4647288|gb|AI622363.1|AI622363
genomic: AGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGNCGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCNCCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|32933889|gb|CF038701.1|CF038701
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|71758667|gb|DR956604.1|DR956604
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|211281986|gb|FL018039.1|FL018039
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|86470645|gb|DY237015.1|DY237015
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|74232917|gb|DT640831.1|DT640831
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|4730607|gb|AI649773.1|AI649773
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: GACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCCCCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|76919652|gb|DV167818.1|DV167818
genomic: GACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|50334197|gb|CO529323.1|CO529323
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|113701975|gb|EE679479.1|EE679479
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|40303330|gb|CK347717.1|CK347717
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|211050465|gb|FL475129.1|FL475129
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|213169886|gb|FM184059.1|FM184059
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|211281987|gb|FL018040.1|FL018040
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|4647287|gb|AI622362.1|AI622362
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCNCCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|74232916|gb|DT640830.1|DT640830
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|74238357|gb|DT646271.1|DT646271
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|211326815|gb|FL454067.1|FL454067
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCMCAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCMCCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|26456270|gb|CA827853.1|CA827853
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGEST: gi|78544875|gb|DV622373.1|DV622373
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCG
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|30032196|gb|CB834047.1|CB834047
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|12971899|gb|BG267713.1|BG267713
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGGCGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
tatcttcctttttcatttcaactgatggtccaataacaaccaccaaaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTTGCTGAAGACCTGGCTGAGGGGTGCTGTGATGTGGGTCCTAGGGAGCTT
caataac putative branch site (score: 2)
tttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggctctgctctgtgctggattcaacacccaccgaatcctgttacgacttaccacaccacaccgatgcaatcggtatcttcctttttcatttcaactgatggtccaataacaaccaccaaaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTTGCTGAAGACCTGGCTGAGGGGTGCTGTGATGTGGGTCCTAGGGAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT