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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcgatccattttacctgttactttagtgctatgaattacgagttacgtgtaggttgcacgctttcagccactcattttgataaccgccttctcccttaattgcggcacagAGATCTTTCCTACAATGAATTCTCCGGGCCAGTTCCTCCTACTATTGGTGATCTCGAGCATCTTCTTGAATT

Basic information

species Zea mays
transcript GRMZM2G082855_T04
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082855_T04 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 3'ss of exon 16
gtaaggcgatccattttacctgttactttagtgctatgaattacgagttacgtgtaggttgcacgctttcagccactcattttgataaccgccttctcccttaattgcggcacagAGATCTTTCCTACAATGAATTCTCCGGGCCAGTTCCTCCTACTATTGGTGATCTCGAGCATCTTCTTGAATT
               | |   |  |||||||  |||| |||||    |||| ||  | |   |  | |   | | || | |  |||   |  |||     ||| ||   | |||| ||||||||||||||||||||||| || ||||||||| |||| ||||||||||| ||||| ||||||||| |
--------------gtaagtagaaactttag--ctat-aattat---ttacctggtgttacaagacctgtgggcgctaaat--gatgttc--ctttattattattttttgaacagGGATCTTTCCTACAATGAATTCTCTGGACCAGTTCCTGCTACCATTGGTGATCTAGAGCACCTTCTTGAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149079907|gb|EE168913.2|EE168913
EST:     AAAGGCCAGATTCCCTCTGAGCTTGGTCACATAGTCAACTTGGACACACT                         AGATCTTTCCTACAATGAATTCTCCGGGCCAGTTCCTCCTACTATTGGTGA
genomic: AAAGGCCAGATTCCCTCTGAGCTTGGTCACATAGTCAACTTGGACACACTgtaaggcgat ... tgcggcacagAGATCTTTCCTACAATGAATTCTCCGGGCCAGTTCCTCCTACTATTGGTGA
EST: gi|148961185|gb|EE011900.2|EE011900
EST:     AAAGGCCAGATTCCCTCTGAGCTTGGTCACATAGTCAACTTGGACACACT                         AGATCTTTCCTACAATGAATTCTCCGGGCCAGTTCCTCCTACTATTGGTGA
genomic: AAAGGCCAGATTCCCTCTGAGCTTGGTCACATAGTCAACTTGGACACACTgtaaggcgat ... tgcggcacagAGATCTTTCCTACAATGAATTCTCCGGGCCAGTTCCTCCTACTATTGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacgctttcagccactcattttgataaccgccttctcccttaattgcggcacagAGATCTTTCCTACAATGAATTCTCCGGGCCAGTTCCTCCTACTATTGGTGATCTCGAGCATCTTCTTGAATT
                               ccttctcccttaatt  CT-rich tract
                  attttgataa  TA-rich tract