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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagattgatttccttctctctgttttccgagtgaaattcctgaggtttctatgttttactagcctgttgtttatctacgatcatgacattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACCCGTTGCGAAAGTAGAATACCGCCTTCGTTTCGTTCCCTTGCGAAAGTAC

Basic information

species Zea mays
transcript GRMZM2G078458_T02
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37396415|gb|CF635498.1|CF635498
EST:     CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG                         GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: gi|71330008|gb|DR801741.1|DR801741
EST:     CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG                         GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: gi|78108130|gb|DV526548.1|DV526548
EST:     CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG                         GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACCCC
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: gi|71298468|gb|DR785212.1|DR785212
EST:     CATCTTTTGGAGCTTTTTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG                         GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: gi|60396915|gb|DN229734.1|DN229734
EST:     CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG                         GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: gi|86469372|gb|DY235742.1|DY235742
EST:     CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG                         GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: gi|78122645|gb|DV541029.1|DV541029
EST:     CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG                         GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaggtttctatgttttactagcctgttgtttatctacgatcatgacattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACCCGTTGCGAAAGTAGAATACCGCCTTCGTTTCGTTCCCTTGCGAAAGTAC
         tatgtttta  TA-rich tract