1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ttatgcctgacagcctgaggaggtctttcaaaaaccaatctcacaactgctgtctgacatgtcctttcattacttaatatgtgttcccttgcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAGGTGCTTATGGATTTCTTCAGGGAACACATCAACGTGACA
species | Zea mays |
transcript | GRMZM2G070045_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGGTCTATGTTGACCATCTCCTTTCTCAG AAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAGEST: gi|60398228|gb|DN231044.1|DN231044
genomic: TGGTCTATGTTGACCATCTCCTTTCTCAGgtttgcagaa ... gcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAG
EST: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTCCTTTCTCAG AAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAGEST: gi|108953640|gb|EC364817.1|EC364817
genomic: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTCCTTTCTCAGgtttgcagaa ... gcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAG
EST: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTTCTTTCTCAG AAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAGGAGEST: gi|67019171|gb|CO447920.1|CO447920
genomic: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTCCTTTCTCAGgtttgcagaa ... gcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAG
EST: CTTGCATAGAGGAAAC-ATTGTGGTCTATGTTGACCATCTTCTTTCTCAG AAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAGGAGEST: gi|67016798|gb|CO445547.1|CO445547
genomic: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTCCTTTCTCAGgtttgcagaa ... gcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAG
EST: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTTCTTTCTCAG AAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAGGAGEST: gi|56691655|gb|CX129558.1|CX129558
genomic: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTCCTTTCTCAGgtttgcagaa ... gcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAG
EST: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTCCTTTCTCAG AAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAGEST: gi|24934258|gb|CA452476.1|CA452476
genomic: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTCCTTTCTCAGgtttgcagaa ... gcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAG
EST: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTCCTTTCTCAG AAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAG
genomic: CTTGCATAGAGGAAACAATTGTGGTCTATGTTGACCATCTCCTTTCTCAGgtttgcagaa ... gcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAG
actgctgtctgacatgtcctttcattacttaatatgtgttcccttgcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAGGTGCTTATGGATTTCTTCAGGGAACACATCAACGTGACA
ttcccttgc CT-rich tract
tttcattacttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgcctgacagcctgaggaggtctttcaaaaaccaatctcacaactgctgtctgacatgtcctttcattacttaatatgtgttcccttgcgtctgtagAAAAACTACATAAAAGAAGAAACGATAGAGAGGATGAGGTTAGATGAAGAGGTGCTTATGGATTTCTTCAGGGAACACATCAACGTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- -tgcctga
- - - - - cagcctg
- - - - - - - - - - - - - - - -aaaccaa
- - - - - - - - - - - - - - - - - - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatg