1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtcctttcccatagtcacatttgaaactattgcaccgagaaacttgtacaactgttttcagaagcagcatattctttactgactgcagATTGCCATAGCTAACCCGAACCGGCAAGTGTACCTTCTGTTGTCAAGATCGGGCATCATTGACTTGGTAGGAGCTGGGTGGTGCTTTGTGCGAGTGCATG
species | Zea mays |
transcript | GRMZM2G068212_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAG ATTGCCATAGCTAACCCGAACCGGCAAGTGTACCTTCTGTTGTCAAGATCGEST: gi|76912513|gb|DV164769.1|DV164769
genomic: TTCAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAGgtcctttccc ... ctgactgcagATTGCCATAGCTAACCCGAACCGGCAAGTGTACCTTCTGTTGTCAAGATCG
EST: TTCAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAG ATTGCCATAGCTAACCCGAACCGGCAAGTGTACCTTCTGTTGTCAAGATCGEST: gi|60342296|gb|DN209269.1|DN209269
genomic: TTCAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAGgtcctttccc ... ctgactgcagATTGCCATAGCTAACCCGAACCGGCAAGTGTACCTTCTGTTGTCAAGATCG
EST: CAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAG ATTGCCATAGCTAACCCGAACCGGCAAGTGTACCTTCTGTTGTCAAGATCGEST: gi|32834247|gb|CD973925.1|CD973925
genomic: CAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAGgtcctttccc ... ctgactgcagATTGCCATAGCTAACCCGAACCGGCAAGTGTACCTTCTGTTGTCAAGATCG
EST: TTCAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAG ATTGCCATAGCTAACCCGAACCGGCAAGTGTEST: gi|32832081|gb|CD971759.1|CD971759
genomic: TTCAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAGgtcctttccc ... ctgactgcagATTGCCATAGCTAACCCGAACCGGCAAGTGT
EST: TTCAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAG ATTGCCATAGCTAACCCGAACCGGCAAGTGTAC
genomic: TTCAAGCTCTTAAAGACTTGCACCAAGAATACAAAGCACGCCATATTCAGgtcctttccc ... ctgactgcagATTGCCATAGCTAACCCGAACCGGCAAGTGTAC
accgagaaacttgtacaactgttttcagaagcagcatattctttactgactgcagATTGCCATAGCTAACCCGAACCGGCAAGTGTACCTTCTGTTGTCAAGATCGGGCATCATTGACTTGGTAGGAGCTGGGTGGTGCTTTGTGCGAGTGCATG
tactgac putative branch site (score: 54)
ttctttact CT-rich tract
atattcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctttcccatagtcacatttgaaactattgcaccgagaaacttgtacaactgttttcagaagcagcatattctttactgactgcagATTGCCATAGCTAACCCGAACCGGCAAGTGTACCTTCTGTTGTCAAGATCGGGCATCATTGACTTGGTAGGAGCTGGGTGGTGCTTTGTGCGAGTGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT