1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaaataaaaagttccactgatctgcatttcaatgtattctactctgcctactacattgatgtttcttctttgctttgcttattttcacttctgaatttgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCCGGAGATTGACTGGAAAACGAGATCGCAGTCCTGTGTATTGAGTAGAGAA
species | Zea mays |
transcript | GRMZM2G064613_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAG AAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCCEST: gi|93013010|gb|EB638530.1|EB638530
genomic: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAGgtaaataaaa ... tgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCC
EST: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAG AAATGAGGTCGGGTGGGTATGGTAAAGCACCATCACCGTCCTCAACGAGCCEST: gi|33095345|gb|CF055339.1|CF055339
genomic: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAGgtaaataaaa ... tgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCC
EST: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAG AAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCCEST: gi|83279226|gb|DV943234.1|DV943234
genomic: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAGgtaaataaaa ... tgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCC
EST: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAG AAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCCEST: gi|211041148|gb|FL348399.1|FL348399
genomic: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAGgtaaataaaa ... tgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCC
EST: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAG AAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCCEST: gi|211146450|gb|FL312557.1|FL312557
genomic: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAGgtaaataaaa ... tgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCC
EST: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAG AAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCCEST: gi|87156303|gb|DY401092.1|DY401092
genomic: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAGgtaaataaaa ... tgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCC
EST: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAG AAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCC
genomic: ACAGAGGAAGTGGAAGGAAGAGTTGGACCAGGAACTTAAAAGAGAGCGAGgtaaataaaa ... tgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCC
acattgatgtttcttctttgctttgcttattttcacttctgaatttgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCCGGAGATTGACTGGAAAACGAGATCGCAGTCCTGTGTATTGAGTAGAGAA
cattgat putative branch site (score: 11)
ttattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataaaaagttccactgatctgcatttcaatgtattctactctgcctactacattgatgtttcttctttgctttgcttattttcacttctgaatttgctgggcagAAATGAGGTCGGGTGGCTATGGTAAAGCACCATCACCGTCCTCAACGAGCCGGAGATTGACTGGAAAACGAGATCGCAGTCCTGTGTATTGAGTAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC