1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
gtttgtggtgttcagttatgttcttgaaatgtatctgttgttttcttgtttattaacaacttccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTG
species | Zea mays |
transcript | GRMZM2G057576_T02 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCAATGAGCCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCEST: gi|18384990|gb|BM418189.1|BM418189
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCEST: gi|15188223|gb|BI417200.1|BI417200
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCEST: gi|18385023|gb|BM418222.1|BM418222
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACT-GTTGAGTTCTTTGGCACCCTTTCA-GGGAGTGGGCACTAGAGTGCEST: gi|22489541|gb|BU049464.1|BU049464
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGTTTTCTAGAGTGCEST: gi|18053133|gb|BM318791.1|BM318791
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTTATGCCATTGATTCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCEST: gi|15313673|gb|BI478897.1|BI478897
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCEST: gi|15313671|gb|BI478896.1|BI478896
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCEST: gi|15177612|gb|BI398551.1|BI398551
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACTTGTT-AGTTCTTTGGC-CCCTTTCA-GGGAGTGGGEST: gi|32928656|gb|CF033468.1|CF033468
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGG
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCEST: gi|88758497|gb|DY542866.1|DY542866
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCEST: gi|32929052|gb|CF033864.1|CF033864
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
EST: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG GCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
genomic: TGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtg ... ccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGC
atgttcttgaaatgtatctgttgttttcttgtttattaacaacttccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTG
tattaac putative branch site (score: 167)
cttccttgc putative PPT
ttttcttgtttattaa TA-rich tract