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gtaaacattgtaggttatttcttggcttctatttctatatttaatctggatctgaagatgtattcttttcttcctgttgataacagAAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAG
species | Zea mays |
transcript | GRMZM2G052880_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CCAAAAAGTCTTCAGTAGGGGGTTTTACACTGAAATTTGATGTTCACAAG AAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCAEST: gi|76911270|gb|DV164216.1|DV164216
genomic: CCAAAAAGTCTTCAGTAGGGGGTTTTACACTGAAATTTGATGTTCACAAGgtaaacattg ... ttgataacagAAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCA
EST: CCAAAAAGTCTTCAGTAGGGGGTTTTACACTGAAATTTGATGTTCACAAG AAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCAEST: gi|6827451|gb|AW331094.1|AW331094
genomic: CCAAAAAGTCTTCAGTAGGGGGTTTTACACTGAAATTTGATGTTCACAAGgtaaacattg ... ttgataacagAAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCA
EST: ATTTGATGTTCACAAG AAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCAEST: gi|76908403|gb|DV162923.1|DV162923
genomic: ATTTGATGTTCACAAGgtaaacattg ... ttgataacagAAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCA
EST: CCAAAAAGTCTTCAGTAGGGGGTTTTACACTGAAATTTGATGTTCACAAG AAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCAEST: gi|211447144|gb|FL470093.1|FL470093
genomic: CCAAAAAGTCTTCAGTAGGGGGTTTTACACTGAAATTTGATGTTCACAAGgtaaacattg ... ttgataacagAAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCA
EST: CAAAAAGTCTTCAGTAGGGGGTTTTACACTGAAATTTGATG-TCACANGG AAG-AACACACAAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGG
genomic: CAAAAAGTCTTCAGTAGGGGGTTTTACACTGAAATTTGATGTTCACA-AGgtaaacattg ... ttgataacagAAGAAACACAC-AAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGG
tttctatatttaatctggatctgaagatgtattcttttcttcctgttgataacagAAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAG
tgttgat putative branch site (score: 37)
tattcttttcttcctg CT-rich tract
atatttaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacattgtaggttatttcttggcttctatttctatatttaatctggatctgaagatgtattcttttcttcctgttgataacagAAGAAACACACAAATCGAAAAGAGCGAACAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG