1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtatcaactgaagccctgaccttattcaagtagtcagttcctgtttgctgttgttctgtatgcgtaacgacttttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACT
species | Zea mays |
transcript | GRMZM2G047310_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GTCAGTATGTGGAATCAAAAGAGAAACAGAAGGCATTTGACATTGGCCAG AAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCAEST: gi|211011729|gb|FL062982.1|FL062982
genomic: GTCAGTATGTGGAATCAAAAGAGAAACAGAAGGCATTTGACATTGGCCAGgtatcaactg ... tttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCA
EST: AAAAGAGAAACAGAAGGCATTTGACATTGGCCAG AAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACACGTACCAEST: gi|101399213|gb|EB821480.1|EB821480
genomic: AAAAGAGAAACAGAAGGCATTTGACATTGGCCAGgtatcaactg ... tttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCA
EST: GTCAGTATGTGGAATCAAAAGAGAAACAGAAGGCATTTGACATTGGCCAG AAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCAEST: gi|71439549|gb|DR820599.1|DR820599
genomic: GTCAGTATGTGGAATCAAAAGAGAAACAGAAGGCATTTGACATTGGCCAGgtatcaactg ... tttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCA
EST: GTCAGTATGTGGAATCAAAAGAGAAACAGAAGGCATTTGACATTGGCCAG AAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCAEST: gi|5816386|gb|AI987302.1|AI987302
genomic: GTCAGTATGTGGAATCAAAAGAGAAACAGAAGGCATTTGACATTGGCCAGgtatcaactg ... tttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCA
EST: GTCAGTATGTGGAATCAAAAGAGAAACAGAAGGCATTTGACATTGGCCAG AAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCAEST: gi|149103859|gb|EE289270.2|EE289270
genomic: GTCAGTATGTGGAATCAAAAGAGAAACAGAAGGCATTTGACATTGGCCAGgtatcaactg ... tttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCA
EST: GGCATTTGACATTGGCCAG AAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCA
genomic: GGCATTTGACATTGGCCAGgtatcaactg ... tttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCA
aagtagtcagttcctgtttgctgttgttctgtatgcgtaacgacttttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACT
gcgtaac putative branch site (score: 284)
cttttccacc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcaactgaagccctgaccttattcaagtagtcagttcctgtttgctgttgttctgtatgcgtaacgacttttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG