1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...ttttggacggagggagtacggagtacctatatgctagacaataagttatatagtagctgctttgcataatccgtaatttgagcaaccaactttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGACCTATGAAGTCCAAGTCCAACTGCCT
species | Zea mays |
transcript | GRMZM2G036206_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGAGACTTTATCAAGGTTTATGCTAACGGGCAGAGGAAAATTTCATGTG ATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGAEST: gi|7844204|gb|AW787426.1|AW787426
genomic: GGAGACTTTATCAAGGTTTATGCTAACGGGCAGAGGAAAATTTCATGTGgtgagtttat ... tttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGA
EST: GGAGACTTTATCAAGGTTTATGCTAACGGGCAGAGGAAAATTTCATGTG ATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGAEST: gi|211089151|gb|FL459717.1|FL459717
genomic: GGAGACTTTATCAAGGTTTATGCTAACGGGCAGAGGAAAATTTCATGTGgtgagtttat ... tttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGA
EST: GGCAGAGG-AAATTTCATGT- ATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGAEST: gi|7844203|gb|AW787425.1|AW787425
genomic: GGCAGAGGAAAATTTCATGTGgtgagtttat ... tttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGA
EST: GGAGACTTTATCAAGGTTTATGCTAACGGGCAGAGGAAAATTTCATGTG ATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGAEST: gi|6020818|gb|AW065746.1|AW065746
genomic: GGAGACTTTATCAAGGTTTATGCTAACGGGCAGAGGAAAATTTCATGTGgtgagtttat ... tttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGA
EST: GAGGAAAATT-CATGTG ATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGAEST: gi|5762226|gb|AI967274.1|AI967274
genomic: GAGGAAAATTTCATGTGgtgagtttat ... tttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGA
EST: GAGGAAAATTTCATGTG ATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGAEST: gi|7844205|gb|AW787427.1|AW787427
genomic: GAGGAAAATTTCATGTGgtgagtttat ... tttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGA
EST: GGAGACTTTATCAAGGTTTATGCTAACGGGCAGAGGAAAATTTCATGTG ATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGA
genomic: GGAGACTTTATCAAGGTTTATGCTAACGGGCAGAGGAAAATTTCATGTGgtgagtttat ... tttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGA
ttatatagtagctgctttgcataatccgtaatttgagcaaccaactttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGACCTATGAAGTCCAAGTCCAACTGCCT
ctttgat putative branch site (score: 49)
taatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggacggagggagtacggagtacctatatgctagacaataagttatatagtagctgctttgcataatccgtaatttgagcaaccaactttgatgcagATCCTGAAACAAAGGAGCTTATTAAGAGAACCCTTGACATTGGGCATGTGACCTATGAAGTCCAAGTCCAACTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccaa