Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaaactagccactccttgttgaattcccgttgctcccttcatgcatcaatgactcaaagctttagtggccaagagttttctgatcactactgtgtctgttttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG

Basic information

species Zea mays
transcript GRMZM2G032222_T03
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032222_T03 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 3'ss of exon 16
gtacgtaaactagccactccttgttgaattcccgttgctcccttcatgcatcaatgactcaaagctttagtggccaagagttttctgatcactactg---tgtctgttttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG
||| | ||| | |||  || |  ||||||    | |    ||| ||   || ||  ||| || ||   |       |  | || || |||||| |||   |   |||| ||||| || ||| || | || |||||||||||||  |||||||| |||||||| || ||||||||||||||||||
gtaaggaaattggcctttcttacttgaatgaaagataa--cctaca---attaagtactgaatgcccaaac-----aaggattgctaatcacttctgccatacatgttctcatgcagGTATGTCACCGACGAGAAAGGTGACCAGAAGCTTCACATAAATGCTCAAAATTGTCTTCATTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78120295|gb|DV538679.1|DV538679
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTTCGA                         ATATATTTTTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|94479206|gb|EB708164.1|EB708164
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTTTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|71756373|gb|DR954310.1|DR954310
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTTTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|87157160|gb|DY401949.1|DY401949
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|161593692|gb|EY964319.1|EY964319
EST:     CGGGTTTACGA                         ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: CGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|31353246|gb|CD437603.1|CD437603
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|76020278|gb|DT947448.1|DT947448
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTTTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|21809980|gb|BQ668298.1|BQ668298
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagctttagtggccaagagttttctgatcactactgtgtctgttttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG
                       ttctgat  putative branch site (score: 3)
                                        tctgttttc  putative PPT
                                            ttttcat  TA-rich tract