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gtcagttcctgatgcttgattatccaaaatataagggaaatttgcaaatacccctaaaagtcaccgagtttgatttccctcccatatcaaactccatgtgacttgaaaggcggcttttgcattttcctattgattagtaaccttccccataatcaatgtatttaatgctactcagtttgcctattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGAGGATCACATTCAGTTTCAAAAAACAACCTGGAAAACCTCAGGAGACTAC
species | Zea mays |
transcript | GRMZM2G030144_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTG ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGAEST: gi|113701558|gb|EE679062.1|EE679062
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: TCAGGCACATTTCTTCTTG ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGAEST: gi|71433259|gb|DR814309.1|DR814309
genomic: TCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTG ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGAEST: gi|67021834|gb|CO450583.1|CO450583
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTG ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGAEST: gi|88751809|gb|DY535950.1|DY535950
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCGGGCACATCTCTTCCTG ATGAAAACGCACCCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGAEST: gi|67037313|gb|CO464163.1|CO464163
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTG ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
gtaaccttccccataatcaatgtatttaatgctactcagtttgcctattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGAGGATCACATTCAGTTTCAAAAAACAACCTGGAAAACCTCAGGAGACTAC
tttgcct CT-rich tract
ataatcaatgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttcctgatgcttgattatccaaaatataagggaaatttgcaaatacccctaaaagtcaccgagtttgatttccctcccatatcaaactccatgtgacttgaaaggcggcttttgcattttcctattgattagtaaccttccccataatcaatgtatttaatgctactcagtttgcctattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGAGGATCACATTCAGTTTCAAAAAACAACCTGGAAAACCTCAGGAGACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA