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gtcaggagttctccctcccttcccaactctacgctgcccatgcatggcatctctctatctactgtctgctgctatactactgtgatgttactacccttatatgcacagATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCGTTGCCTCGGTGGAAGGAGGGGAATTGCCCGGTCACTGCTACCTCTGTAC
species | Zea mays |
transcript | GRMZM2G030138_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GTCTTTTCTGGGGAAACCGTCGTCTACAGCCCCGTTCTTGATCTTGACAG ATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCGEST: gi|89763544|gb|DY690689.1|DY690689
genomic: GTCTCTTCTTGGGAAACCGTCGTCTACAGCCCCGTTCTTGATCTTGACAGgtcaggagtt ... atatgcacagATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCG
EST: GTCTCTTCTTGGGAAACCGTCGTCTACAGCCCCGTTCTTGATCTTGACAG ATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCGEST: gi|9733314|gb|BE512066.1|BE512066
genomic: GTCTCTTCTTGGGAAACCGTCGTCTACAGCCCCGTTCTTGATCTTGACAGgtcaggagtt ... atatgcacagATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCG
EST: GTCTCTTCTTGGGAAACCGTCGTCTACAGCCCCGTTCTTGATCTTGACAG ATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCGEST: gi|71449827|gb|DR830877.1|DR830877
genomic: GTCTCTTCTTGGGAAACCGTCGTCTACAGCCCCGTTCTTGATCTTGACAGgtcaggagtt ... atatgcacagATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCG
EST: GTCNNNNNNNGGGAAACCGTCGTCTACAGCCCCGTTCTTGATCTTGACAG ATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCG
genomic: GTCTCTTCTTGGGAAACCGTCGTCTACAGCCCCGTTCTTGATCTTGACAGgtcaggagtt ... atatgcacagATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCG
tctatctactgtctgctgctatactactgtgatgttactacccttatatgcacagATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCGTTGCCTCGGTGGAAGGAGGGGAATTGCCCGGTCACTGCTACCTCTGTAC
cccttat CT-rich tract
ttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggagttctccctcccttcccaactctacgctgcccatgcatggcatctctctatctactgtctgctgctatactactgtgatgttactacccttatatgcacagATGGGCGTTCCCGATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCGTTGCCTCGGTGGAAGGAGGGGAATTGCCCGGTCACTGCTACCTCTGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG