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gtaaggaagttctattttaagtgtattatagctacaataggctgcttttgaccaaaatttggtttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTTCTGCAGCAAGTTGATAG
species | Zea mays |
transcript | GRMZM2G028535_T02 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAAAAGTGCTGCAAAGGCCTTEST: gi|60344250|gb|DN211223.1|DN211223
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|60355192|gb|DN222165.1|DN222165
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|211181077|gb|FL441225.1|FL441225
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|101391685|gb|EB817779.1|EB817779
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|149066719|gb|EE286860.2|EE286860
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|67017479|gb|CO446228.1|CO446228
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCGGAGGCCTT
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
aagtgtattatagctacaataggctgcttttgaccaaaatttggtttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTTCTGCAGCAAGTTGATAG
ttttgac putative branch site (score: 638)
tttggtttcttttc putative PPT
tattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaagttctattttaagtgtattatagctacaataggctgcttttgaccaaaatttggtttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTTCTGCAGCAAGTTGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG