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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttcagagtcacatatttttcagcttgcttagtaatacccatgacaagtaacaagtttctgccatctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATGCAGAAAAGTGATTTCATGTTCGATTCGGTGTATAATTAATATTTTTCAG

Basic information

species Zea mays
transcript GRMZM2G027756_T02
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027756_T01 (Zea mays), 3'ss of exon 19
lower sequence: LOC_Os07g32400.1 (Oryza sativa), 3'ss of exon 19
gttggttcagagtcac-atatttttcagcttgcttagtaatacccatgacaagtaacaagtttctgccatctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATGCAGAAAAGTGATTTCATGTT-CGATTCGGTGTATAATTAATATTTTTCAG--
||| ||| ||||  |   | |   |   |||  |      | ||||  ||||  |   ||||  ||||||   ||||||||||||||||||||||| |||||||||||||| || |||      | || || ||||   |   |  ||   |||||  |||||||||||| ||        
gtttgtttagagaaattgtttcccttttcttattattgctttcccacaacaaagagtgagttgatgccattggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAG---ACAATACAAAAAAAAAAAAACCCGTCATGATTCAATGTATAATTAATTTTGAGTGTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558313|gb|CA830548.1|CA830548
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAG                         GTGGCAAAATCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
EST: gi|37388207|gb|CF631310.1|CF631310
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAG                         GTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
EST: gi|21809667|gb|BQ667985.1|BQ667985
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAG                         GTGGCAAAATCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
EST: gi|76282536|gb|DV022104.1|DV022104
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAG                         GTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
EST: gi|211258617|gb|FL476981.1|FL476981
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTYTCACAAG                         GTGGCAAAACCAAGTTTYTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
EST: gi|21987637|gb|BQ779165.1|BQ779165
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAG                         GTGGCAAAATCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
EST: gi|26557878|gb|CA830113.1|CA830113
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAG                         GTGGCAAAATCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
EST: gi|26456119|gb|CA827702.1|CA827702
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAG                         GTGGCAAAATCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
EST: gi|20208212|gb|BQ134301.1|BQ134301
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAG                         GTGGCTTAATCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
EST: gi|32910820|gb|CF015632.1|CF015632
EST:     CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAG                         GTGGCAAAATCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG
genomic: CCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcag ... atctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagcttgcttagtaatacccatgacaagtaacaagtttctgccatctttgcagGTGGCAAAACCAAGTTTCTCAAGATCTTAACTCTGTTTGATCCCTGCGATGCAGAAAAGTGATTTCATGTTCGATTCGGTGTATAATTAATATTTTTCAG
                           aagtaac  putative branch site (score: 2)
                                     tttctgccatcttt  putative PPT
          ttagtaata  TA-rich tract