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...gttatttttattttgtaacacaatctttgcaaatcaatcatagcattccgccaagtaaaattgctagctgcacctaacattttttttttgcctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG
species | Zea mays |
transcript | GRMZM2G021864_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|78022987|gb|DV491374.1|DV491374
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|32931903|gb|CF036715.1|CF036715
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|211458170|gb|FL127582.1|FL127582
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|89248917|gb|DY620703.1|DY620703
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|89758497|gb|DY687658.1|DY687658
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|211460681|gb|FL127583.1|FL127583
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|32934210|gb|CF039022.1|CF039022
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|78106767|gb|DV525185.1|DV525185
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|32912991|gb|CF017803.1|CF017803
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: GGCTGATCAAGCACAAGAGAACAATTATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGGGTCCTAGATCCTEST: gi|116827696|gb|EC871624.1|EC871624
genomic: T-CTGATCAAGCACAAGAGAACAAT-ATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCT
EST: GAAG-TTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTANATCCTAGTTTTATTGAGEST: gi|32930527|gb|CF035339.1|CF035339
genomic: GAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCGCAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|5915604|gb|AW053245.1|AW053245
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|32932800|gb|CF037612.1|CF037612
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|5713643|gb|AI943635.1|AI943635
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: ATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|5361116|gb|AI795731.1|AI795731
genomic: ATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|32932808|gb|CF037620.1|CF037620
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|91054831|gb|EB165249.1|EB165249
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|13381810|gb|BG458485.1|BG458485
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGEST: gi|12968788|gb|BG265825.1|BG265825
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
EST: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAG GATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
genomic: CGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGgtttgcactt ... cctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAG
ttccgccaagtaaaattgctagctgcacctaacattttttttttgcctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG
acctaac putative branch site (score: 63)
cattttttttttgcct CT-rich tract
taacatttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttttattttgtaacacaatctttgcaaatcaatcatagcattccgccaagtaaaattgctagctgcacctaacattttttttttgcctcgttcagGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - aacacaa
- - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - gcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcac