Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacaaagtaccatgtaaacatgttgaacttgttggaattaaatttctgcattgattgagctaataaatttctctttaactgcctgattatggtgtgcagTGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCGGCTCAAATGTGAGAAAACAGCAACT

Basic information

species Zea mays
transcript GRMZM2G021846_T01
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8103262|gb|AW927912.1|AW927912
EST:     GAGAGTTTACATAATGTTAGAGGAAGAGTCGGTGGTGATACAGTTCTAAG                         TGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCG
genomic: GAGAGTTTACATAATGTTAGAGGAAGAGTCGGTGGTGATACAGTTCTAAGgtttgctttc ... tggtgtgcagTGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCG
EST: gi|32840580|gb|CD980261.1|CD980261
EST:     GAGAGTTTACATAATGTTAGAGGAAGAGTCGGTGGTGATACAGTTCTAAG                         TGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCG
genomic: GAGAGTTTACATAATGTTAGAGGAAGAGTCGGTGGTGATACAGTTCTAAGgtttgctttc ... tggtgtgcagTGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCG
EST: gi|211251717|gb|FL157188.1|FL157188
EST:     GAGAGTTTACATAATGTTAGAGGAAGAGTCGGTGGTGATACAGTTCTAAG                         TGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCG
genomic: GAGAGTTTACATAATGTTAGAGGAAGAGTCGGTGGTGATACAGTTCTAAGgtttgctttc ... tggtgtgcagTGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCG
EST: gi|149062837|gb|EE157555.2|EE157555
EST:     GAGAGTTTACATAATGTTAGAGGAAGAGTCGGTGGTGATACAGTTCTAAG                         TGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCG
genomic: GAGAGTTTACATAATGTTAGAGGAAGAGTCGGTGGTGATACAGTTCTAAGgtttgctttc ... tggtgtgcagTGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcattgattgagctaataaatttctctttaactgcctgattatggtgtgcagTGAAACTGGCGAACTTTATGCAAAGAAACTAGCCAACTTTATAGAAAAGCGGCTCAAATGTGAGAAAACAGCAACT
                taataaatttctcttt  TA-rich tract