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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctagtttttttggaaagcatacattgccaatgcttataatatgcacattgttctggttcattatctcattctttccctgtgatgatatttatgtagttctctaattatttgatttcattatcttaatgcattttttcttacattagGAAATTAAGTTCGAACCCAATGTGATGTGTGAATACATTGATAACAGGCTTCTGTTCCGATCTTGCCAG

Basic information

species Zea mays
transcript GRMZM2G018508_T03
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018508_T03 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os07g06950.1 (Oryza sativa), 3'ss of exon 20
gttagtctagtttttttggaaagcatacattgccaatgcttataatatgcacattgttctggttcattatctca----ttctttccctgtgatgatatttatgtagttctctaattatttgatttcattatcttaatgcattttttcttacattagGAAATTAAGTTCGAACCCAATGTGATGTGTGAATACATTGATAACAGGCTTCTGTTCCGATCTTGCCAG
                                                     ||| | |  || || || | |       | || |||  | |||||  || |  ||||   || |    || | |   | ||  | |  |||  |  | | |||||||| ||||| || |||||||| ||||||||||| ||||| || |||||||| || ||| ||||||||
----------------------------------------------------gttgctttc-tttatcatgtaaaaaagcttgtctctgcaa-gatatgcatatcattctg-gatcagc--atgtgaccttttt--tcccctttcaccaatactagGAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagttctctaattatttgatttcattatcttaatgcattttttcttacattagGAAATTAAGTTCGAACCCAATGTGATGTGTGAATACATTGATAACAGGCTTCTGTTCCGATCTTGCCAG
                                           ttcttac  putative branch site (score: 2)
                                       ttttttcttacatt  CT-rich tract
          taattatttgatttca  TA-rich tract