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...tatatgtttattctgcatggggccataatttctttatttttgtcatggagtggggaatagaacatggtattaacattgccatctatttatttccactcagATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGTATTTACATTACTGTACAGAATGTCAGCTTTGAGCTATCTCAA
species | Zea mays |
transcript | GRMZM2G011219_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTAAGAGACAAAATCACACTTAGTAGTGGCCGTTTTGTCCTTGGTAACAA ATACGCACGGACGTTTATATTCTTCTACAGCATCGGATT-CATCTCCTTGTEST: gi|16378868|gb|BI992644.1|BI992644
genomic: TTAAGAGACAAAATCACACTTAGTAGTGGCCGTTTTGTCCTTGGTAACAAgtatgatact ... ttccactcagATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGT
EST: TTAAGAGACAAAATCACACTTAGTAGTGGCCGTTTTGTCCTTGGTAACAA ATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGTEST: gi|32937976|gb|CF042795.1|CF042795
genomic: TTAAGAGACAAAATCACACTTAGTAGTGGCCGTTTTGTCCTTGGTAACAAgtatgatact ... ttccactcagATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGT
EST: TTAAGAGACAAAATCACACTTAGTAGTGGCCGTTTTGTCCTTGGTAACAA ATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGTEST: gi|7138062|gb|AW499410.1|AW499410
genomic: TTAAGAGACAAAATCACACTTAGTAGTGGCCGTTTTGTCCTTGGTAACAAgtatgatact ... ttccactcagATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGT
EST: TTAAGAGACAAAATCACACTTAGTAGTGGCCGTTTTGTCCTTGGTAACAA ATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGT
genomic: TTAAGAGACAAAATCACACTTAGTAGTGGCCGTTTTGTCCTTGGTAACAAgtatgatact ... ttccactcagATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGT
tggagtggggaatagaacatggtattaacattgccatctatttatttccactcagATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGTATTTACATTACTGTACAGAATGTCAGCTTTGAGCTATCTCAA
tattaac putative branch site (score: 110)
tttatttcc putative PPT
atctatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatgtttattctgcatggggccataatttctttatttttgtcatggagtggggaatagaacatggtattaacattgccatctatttatttccactcagATACGCACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGTATTTACATTACTGTACAGAATGTCAGCTTTGAGCTATCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - tgtcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacatg