Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgctgcttggacattgtatgcgttgttatatccataaagaaatacttgtctttcacttatgggactgcacatttgtagGATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAG

Basic information

species Zea mays
transcript GRMZM5G851815_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G851815_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os08g32630.3 (Oryza sativa), 3'ss of exon 15
gttgctgcttggacattgt----atgcgttgttatatc---cataaagaaatacttgtctttc---actta-tgggactgcacatttgtagGATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAG-------------
|||| | || |   |||||    |  |  ||| ||  |   || |  ||||  ||   ||| |   | ||| | | | ||   ||||||||||||||||||| ||||||||||| || |||||| |||| ||||||||||||||| ||||||| ||||| |||||||| |||||||||             
gttgatactagactattgttctaaaccactgtgattccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGGTAGACTCTTAAA

upper sequence: GRMZM5G851815_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os08g32630.5 (Oryza sativa), 3'ss of exon 14
gttgctgcttggacattgt----atgcgttgttatatc---cataaagaaatacttgtctttc---actta-tgggactgcacatttgtagGATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAG
|||| | || |   |||||    |  |  ||| ||  |   || |  ||||  ||   ||| |   | ||| | | | ||   ||||||||||||||||||| ||||||||||| || |||||| |||| ||||||||||||||| ||||||| ||||| |||||||| |||||||||
gttgatactagactattgttctaaaccactgtgattccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAG

upper sequence: GRMZM5G851815_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os08g32630.2 (Oryza sativa), 3'ss of exon 15
gttgctgcttggacattgt----atgcgttgttatatc---cataaagaaatacttgtctttc---actta-tgggactgcacatttgtagGATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAG
|||| | || |   |||||    |  |  ||| ||  |   || |  ||||  ||   ||| |   | ||| | | | ||   ||||||||||||||||||| ||||||||||| || |||||| |||| |||                                             
gttgatactagactattgttctaaaccactgtgattccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTA---------------------------------------------

upper sequence: GRMZM5G851815_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os08g32630.2 (Oryza sativa), 3'ss of exon 16
--------------gttgctgcttggacattgtatgcgttgttatat---ccataaagaaatacttgtctttcacttatgggactgcacatttgtagGATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACT--AGACCACAAATTTTACCTTCCATATTTAAGCAG-----------
                  | | ||   | ||  ||   |    |  |   |  | || ||| | |    ||  | || |   |||     |||     |  | | | |   |   |   |       | |||    | |    |  |  ||  || |   |  |     | | | ||  |   |||           
gtaatgatcactcgaccacagattttgccttccatttttaagcaggtagactcttaaaaaacattcaagtt--atttttctaactttgattttcagAAACTTCAGATAAGCTATGCTGGTCA-ATGGATTTTATCTCCATCTCTTCTTGCTTTAGGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191424|gb|FL472421.1|FL472421
EST:     AAACTAGGGGATTCGGTACTTCGGCCATTTCTACAG                         GATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATC
genomic: AAACTAGGGGATTCGGTACTTCGGCCATTTCTACAGgttgctgctt ... acatttgtagGATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatatccataaagaaatacttgtctttcacttatgggactgcacatttgtagGATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAG
          ataaagaaatactt  TA-rich tract