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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accatcgaaatgtaaagaatattgtttgaccccgcgccatggcgaccttgattatttttttttttgcatgaactgacccaagatttttcttgccgtgcagGATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGTACTTAAAAACACCTGTGATGGCTACAATGCGGCCTGTCTGATGTTCCTAAC

Basic information

species Zea mays
transcript GRMZM5G837018_T02
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929791|gb|CF034603.1|CF034603
EST:     AAGACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAG                         GATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
genomic: AACACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAGgtaaactgtt ... tgccgtgcagGATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
EST: gi|32928858|gb|CF033670.1|CF033670
EST:     AAGACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAG                         GATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
genomic: AACACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAGgtaaactgtt ... tgccgtgcagGATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
EST: gi|32929234|gb|CF034046.1|CF034046
EST:     AAGACAAAAAAGAACATTCTGGCAGCCACGATTTCAGTCTGCACAGAAAG                         GATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
genomic: AACACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAGgtaaactgtt ... tgccgtgcagGATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
EST: gi|32929010|gb|CF033822.1|CF033822
EST:     AAGACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAG                         GATCTGTGGTCCACGGAAAGGAAATGACAGGCCTCGAGATCCTTCTGGT
genomic: AACACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAGgtaaactgtt ... tgccgtgcagGATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
EST: gi|32929217|gb|CF034029.1|CF034029
EST:     AAGACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAG                         GATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
genomic: AACACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAGgtaaactgtt ... tgccgtgcagGATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
EST: gi|32928591|gb|CF033403.1|CF033403
EST:     AAGACAACAAGGAACATTCTGGCAGCCACGATTTCAGTCTGCACAGAAAG                         GATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT
genomic: AACACAACAAGGAACATTCTGGCAGCCATGATTTCAGTCTGCACAGAAAGgtaaactgtt ... tgccgtgcagGATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgattatttttttttttgcatgaactgacccaagatttttcttgccgtgcagGATCTGTGGTCCACGGAAAGGAAATGACGGGCCTCGAGATCCTTCTGGTACTTAAAAACACCTGTGATGGCTACAATGCGGCCTGTCTGATGTTCCTAAC
                         aactgac  putative branch site (score: 2)
                                      tttttcttgcc  putative PPT
     attatttttttttttg  TA-rich tract