Sequence
atgc intronic sequence ATGC exonic sequencegtttgtatagaaagagaaacaaaaaaacaggcttgctgctaagttgctgtcgttttgtttttctttgcttgacatgtttgttccattattaagGATATGAGCCCAGAAAACAAAATGAGGTTGCTGATTATATATGCAATTGTATATCCAGAGAAGTTTGAAGGTGACAAAGGGGAAAAGTTGATGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G830776_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os06g04450.2 (Oryza sativa), 3'ss of exon 14
gtttgtatagaaagagaaacaaaaaaacaggcttgctgctaagttgctgtcgttttgtttttctttgcttgacatgtttgttccattattaagGATATGAGCCCAGAAAACAAAATGAGGTTGCTGATTATATATGCAATTGTATATCCAGAGAAGTTTGAAGGTGACAAAGGGGAAAAGTTGATGCAG
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gtttgttaagaaagagaga-atgaaagcagtcttactgctaattatttgtcagttt-ttattcaatgcttactgaactt--tctattgttcagGATATGAGCCCAGAAAACAAATTGAGGTTGCTTATTATATATGCAATTGTATATCCAGAGAAGTTTGAAGGTGACAAAGGGGAAAAGTTGATGCAG
upper sequence: GRMZM5G830776_T01 (Zea mays), 3'ss of exon 14
lower sequence: Vv15s0048g00970.t01 (Vitis vinifera), 3'ss of exon 13
-----------------------------------------------------------------gtttgtatagaaagagaaacaaaaaaacaggcttgctgctaagttgctgtcgttttgtttttctttgcttgacatgtttgttcca-ttattaagGATATGAGCCCAGAAAACAAAATGAGGTTGCTGATTATATATGCAATTGTATATCCAGAGAAGTTTGAAGGTGACAAAGGGGAAAAGTTGATGCAG
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gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaatgcaccatattgggtaatgtctacttttttatttaaaa--tttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG
upper sequence: GRMZM5G830776_T01 (Zea mays), 3'ss of exon 14
lower sequence: Vv15s0045g00060.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------------------gtttgtatagaaagagaaacaaaaaaacaggcttgctgctaagttgctgtcgttttgtttttctttgcttgacatgtttgttcca-ttattaagGATATGAGCCCAGAAAACAAAATGAGGTTGCTGATTATATATGCAATTGTATATCCAGAGAAGTTTGAAGGTGACAAAGGGGAAAAGTTGATGCAG
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gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataattttgtttggaaatgaactaatgcaccatattgggtaatgtctacttttttatttgaaa--tttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAACGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctaagttgctgtcgttttgtttttctttgcttgacatgtttgttccattattaagGATATGAGCCCAGAAAACAAAATGAGGTTGCTGATTATATATGCAATTGTATATCCAGAGAAGTTTGAAGGTGACAAAGGGGAAAAGTTGATGCAG
gcttgac putative branch site (score: 4)
tttgttcc putative PPT
ttttgtttttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtatagaaagagaaacaaaaaaacaggcttgctgctaagttgctgtcgttttgtttttctttgcttgacatgtttgttccattattaagGATATGAGCCCAGAAAACAAAATGAGGTTGCTGATTATATATGCAATTGTATATCCAGAGAAGTTTGAAGGTGACAAAGGGGAAAAGTTGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG