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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcggtttggtgattcttaatattttattatttaaattgtatttttaggctggcactatataatagtacatatctgattatatcacttagtaacttgtactcatccataccttttagGAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAGAATGAGAAATTTGGACACTCT

Basic information

species Zea mays
transcript GRMZM2G463904_T01
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211045102|gb|FL385027.1|FL385027
EST:     AATGGAACCATTCCACGTTCATTTCACAAGCTCGAGAGTCTGACTTATCT                         GAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
genomic: AATGGAACCATTCCACGTTCATTTCACAAGCTTGAGAGTCTGACTTATCTgtaagcggtt ... taccttttagGAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
EST: gi|211374959|gb|FL429401.1|FL429401
EST:     AATGGAACCATTCCACGTTCATTTCACAAGCTCGAGAGTCTGACTTATCT                         GAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
genomic: AATGGAACCATTCCACGTTCATTTCACAAGCTTGAGAGTCTGACTTATCTgtaagcggtt ... taccttttagGAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
EST: gi|71447930|gb|DR828980.1|DR828980
EST:     AATGGAACCATTCCACGTTCATTTCACAAGCTTGAGAGTCTGACTTATCT                         GAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
genomic: AATGGAACCATTCCACGTTCATTTCACAAGCTTGAGAGTCTGACTTATCTgtaagcggtt ... taccttttagGAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
EST: gi|71447931|gb|DR828981.1|DR828981
EST:     AATGGAACCATTCCACGTTCATTTCACAAGCTTGAGAGTCTGACTTATCT                         GAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
genomic: AATGGAACCATTCCACGTTCATTTCACAAGCTTGAGAGTCTGACTTATCTgtaagcggtt ... taccttttagGAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
EST: gi|211131186|gb|FL407402.1|FL407402
EST:     AATGGAACCATTCCACGTTCATTTCACAAGCTCGAGAGTCTGACTTATCT                         GAATCTGTAATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
genomic: AATGGAACCATTCCACGTTCATTTCACAAGCTTGAGAGTCTGACTTATCTgtaagcggtt ... taccttttagGAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
EST: gi|101392872|gb|EB818367.1|EB818367
EST:     AATGGAACCATTCCACGTTCATTTCACAAGCTTGAGAGTCTGACTTATCT                         GAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG
genomic: AATGGAACCATTCCACGTTCATTTCACAAGCTTGAGAGTCTGACTTATCTgtaagcggtt ... taccttttagGAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtacatatctgattatatcacttagtaacttgtactcatccataccttttagGAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAGAATGAGAAATTTGGACACTCT
                         tagtaac  putative branch site (score: 1)
                                             tacctttt  putative PPT
       atatctgattatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcggtttggtgattcttaatattttattatttaaattgtatttttaggctggcactatataatagtacatatctgattatatcacttagtaacttgtactcatccataccttttagGAATCTGTCATCAAATCATCTCAGTGGAGCACTTCCAATTGAGGTTGCAAGAATGAGAAATTTGGACACTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA