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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaactctaaatcactttgagtaagcacagtaatagcctttgtggtcgcatgctgcggaaataagttgttgtgttactacgcagGTGTTAGGAGATATCGCACCGTCGCTCTCTCTGGACGAGCTACAAAACTACGAACAGTTGAGGCAGAAGATCGAAGGACCTTCTAGATGAAGTTGGGTTT

Basic information

species Zea mays
transcript GRMZM2G445617_T01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G445617_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os04g52690.1 (Oryza sativa), 3'ss of exon 15
gtaaaactctaaatcactttgagtaagcacagtaatagcctttgtggtcgcatgctgcggaaataagttgttgtgttactacgcagGTGTTAGGAGATATCGCACCGTCGCTCTCTCTGGACGAGCTACAAAACTACGAACAGTTGAGGCAGAAGATCGAAGGACCTTCTAGATGAAGTTGGGTTT
|||| ||| || |||| |||| | | | ||| |||      || || ||  ||           || |  ||   || |||  ||||||||||| |||||| |||| ||| | ||| | || ||  |||||||||| |||||||||||| ||||||| || ||||| ||||||||| ||  | |  
gtaagactttatatcattttgggcatg-acaataagtatgatt-tgttcatat----------caactaatttcattgctattcagGTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTATGAACAGTTGAGGAAGAAGATTGAGGGACCATCTAGATGACGTCAGTTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatagcctttgtggtcgcatgctgcggaaataagttgttgtgttactacgcagGTGTTAGGAGATATCGCACCGTCGCTCTCTCTGGACGAGCTACAAAACTACGAACAGTTGAGGCAGAAGATCGAAGGACCTTCTAGATGAAGTTGGGTTT
                             aaataagtt  TA-rich tract