Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctgtctatcatcatcaatatacaaacacacgcttccaactctcttacaccaacaaatttttgattgatttatgtatggtttgtgctgaatgtatgtagACACTTAGGCGTCGCATTGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGGTCCAATGATCCATTCAACAGTATCATCAGGTCCTTGTGTTGGTGTAGAC

Basic information

species Zea mays
transcript GRMZM2G406553_T04
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G406553_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 3'ss of exon 15
-------------------------------------------------------------------------------tgctgtctatcatcatcaatatacaaacacacgcttccaactctcttacaccaacaaatttttgattg-atttatgtatggtttgt------gctgaatgtatgtagACACTTAGGCGTCGCATTGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGGTCCAATGATCCATTCAACAGTATCATCAGGTC---CTTGTGTTGGTGTAGAC
                                                                               || | | || | |  |  |   |    |  |   |   |  |  | | ||   |   |||||  |||| | |||    |  ||  |      ||| ||| ||   || |||||||| ||  || |||||||||||||||||||||| ||||| |||||  || | || ||||||||||||||| | ||||   ||| ||||||||||   
gtaacttaccgctgcttttgttattattatgatcctgttgtgggagtatatagaaatggttagagacaatttattcatatg-tatgtaccgtactgcactgattgccttaacatcttatatgccatgcatttatttattttaaattgcaattaaaagtatttcttacaaaagctaaatctacacagGCACTTAGGTGTTTCACTGGAATTGTTGGTGAAGCTTGTCAGGACGTTTGGATCAGTAATACATTCAACAGTATCAGCTGGTCCCTCTTCTGTTGGTGTA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116825719|gb|EC869457.1|EC869457
EST:     TGATCTTCTGGAGAGT-AAATTGACAG                         ACACTTAGGCGTCGCATTGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGG
genomic: TGATCTTCTGGAGAGTAAAATTGACAGgtacttgttg ... atgtatgtagACACTTAGGCGTCGCATTGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGG
EST: gi|211485864|gb|FL429911.1|FL429911
EST:     TCTATCCTACCTGCCGCCACTGATCTTCTGGAGAGTAAAATTGACAG                         ACACTTAGGCGTCGCATTGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGG
genomic: TCTATCCTACCTGCCGCCACTGATCTTCTGGAGAGTAAAATTGACAGgtacttgttg ... atgtatgtagACACTTAGGCGTCGCATTGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGG
EST: gi|60348179|gb|DN215152.1|DN215152
EST:     AGTAAAATTGACAG                         ACACTTAGGCGTCGCATGGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGG
genomic: AGTAAAATTGACAGgtacttgttg ... atgtatgtagACACTTAGGCGTCGCATTGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacaccaacaaatttttgattgatttatgtatggtttgtgctgaatgtatgtagACACTTAGGCGTCGCATTGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGGTCCAATGATCCATTCAACAGTATCATCAGGTCCTTGTGTTGGTGTAGAC
          aaatttttgattgatt  TA-rich tract