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gtatgctcttgaactcgcttttctaagttccataaaaaataagaatggctacttcaagtaacatatacatcttatttctttcgtttcagGTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTACTGAATGCAAGTACAGGTGAACTGACTGATAGAAAGAAGGTTACCCTCG
species | Zea mays |
transcript | GRMZM2G402002_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGG GTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTAEST: gi|32944948|gb|CF049767.1|CF049767
genomic: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGGgtatgctctt ... ttcgtttcagGTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTA
EST: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGG GTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTAEST: gi|33094091|gb|CF054085.1|CF054085
genomic: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGGgtatgctctt ... ttcgtttcagGTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTA
EST: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCATCTTGGAGGGG GTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTAEST: gi|78088360|gb|DV516753.1|DV516753
genomic: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGGgtatgctctt ... ttcgtttcagGTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTA
EST: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGG GTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTAEST: gi|32930847|gb|CF035659.1|CF035659
genomic: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGGgtatgctctt ... ttcgtttcagGTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTA
EST: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGG GTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTAEST: gi|32943223|gb|CF048042.1|CF048042
genomic: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGGgtatgctctt ... ttcgtttcagGTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTA
EST: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGG GTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTA
genomic: TGGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTGTGCACCTTGGAGGGGgtatgctctt ... ttcgtttcagGTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTA
aaaaataagaatggctacttcaagtaacatatacatcttatttctttcgtttcagGTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTACTGAATGCAAGTACAGGTGAACTGACTGATAGAAAGAAGGTTACCCTCG
aagtaac putative branch site (score: 143)
tcttatttctttcgtt putative PPT
atatacatcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcttgaactcgcttttctaagttccataaaaaataagaatggctacttcaagtaacatatacatcttatttctttcgtttcagGTTTCGTATTTGCTTTGTGCTCTTGGGGATGGTAATTTGTTCAGTTTTCTACTGAATGCAAGTACAGGTGAACTGACTGATAGAAAGAAGGTTACCCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG