1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tagcttggagctattctggttacagcagtgacatttgttactaacttcatgcaaaagttgcttatgtctggctgatagtttcttgcaatttctttctcagTGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAGGAGTGGTAGAGAACGCACTTTCTGTTGGGAAAGTTTTCTGTCCCCTATG
species | Zea mays |
transcript | GRMZM2G399212_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAG TGATCACATTGCTCTTGTTAEST: gi|19058731|gb|BM737398.1|BM737398
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAGgtaattatta ... tctttctcagTGATCACATTGCTCTTGTTA
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAG TGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAGEST: gi|87153694|gb|DY398483.1|DY398483
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAGgtaattatta ... tctttctcagTGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAG
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAG TGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAG
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAGgtaattatta ... tctttctcagTGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAG
ttcatgcaaaagttgcttatgtctggctgatagtttcttgcaatttctttctcagTGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAGGAGTGGTAGAGAACGCACTTTCTGTTGGGAAAGTTTTCTGTCCCCTATG
ggctgat putative branch site (score: 21)
tttctttctc putative PPT
aatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcttggagctattctggttacagcagtgacatttgttactaacttcatgcaaaagttgcttatgtctggctgatagtttcttgcaatttctttctcagTGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAGGAGTGGTAGAGAACGCACTTTCTGTTGGGAAAGTTTTCTGTCCCCTATG
- - -tggagct
- - - - - - -ttctggt
- - - - - - - - - - -acagcag
- - - - - - - - - - - - - - tgacatt
- - - - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctgat