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gtataatccagcaaaccttggaggatgtagtctttgtttcattgtcaattctgttagcattctgtttgtttatgctatatatactgaacaagtttttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAAAGAAAATCTTGAGGATTATCGGGAGAAAGTTAGAAAAATCTATGCTCAA
species | Zea mays |
transcript | GRMZM2G395749_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAAEST: gi|211179375|gb|FL244879.1|FL244879
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
EST: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAAEST: gi|211179377|gb|FL244881.1|FL244881
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
EST: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAAEST: gi|31354962|gb|CD439319.1|CD439319
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
EST: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAAEST: gi|211179378|gb|FL244882.1|FL244882
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
EST: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
tctgttagcattctgtttgtttatgctatatatactgaacaagtttttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAAAGAAAATCTTGAGGATTATCGGGAGAAAGTTAGAAAAATCTATGCTCAA
tttttcctgc CT-rich tract
tttatgctatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatccagcaaaccttggaggatgtagtctttgtttcattgtcaattctgttagcattctgtttgtttatgctatatatactgaacaagtttttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAAAGAAAATCTTGAGGATTATCGGGAGAAAGTTAGAAAAATCTATGCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA