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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtatagtagtagtagcccggccccatatagtatatatagtatatcgaattaattaattaattaatgatgagctgactgcgcacgcccaacgcttgcttgcagGTTCTTCATGGTGGCCAACGCGATCGCGGCGGGGTACCTGGTGCTGTCCCTCCCCTTCTCCGCCGTCGTCGTCCTCCGCCCCCAGGCCATCGGCTTGCGC

Basic information

species Zea mays
transcript GRMZM2G382104_T01
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211095549|gb|FL307585.1|FL307585
EST:     ACCCAGTTCTTCCAGTTCCACGCCCGATTCGACGACTTCCCGGCGCTCCT                         GTTCTTCATGGTGGCCAACGCGATCGCGGCGG
genomic: ACCCAGTTCTTCCAGTTCCACGCCCGATTCGACGACTTCCCGGCGCTCCTgtcagtatag ... ttgcttgcagGTTCTTCATGGTGGCCAACGCGATCGCGGCGG
EST: gi|120480771|gb|EH211008.1|EH211008
EST:     ACCCAGTTCTTCCAGTTCCACGCCCGATTCGACGACTTCCCGGCGCTCCT                         GTTCTTCATGGTGRCCAACGCGATCGCGGCGGGGGTACCTGGTGCTGTCCC
genomic: ACCCAGTTCTTCCAGTTCCACGCCCGATTCGACGACTTCCCGGCGCTCCTgtcagtatag ... ttgcttgcagGTTCTTCATGGTGGCCAACGCGATCGCGGCGGGG-TACCTGGTGCTGTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaattaattaattaatgatgagctgactgcgcacgcccaacgcttgcttgcagGTTCTTCATGGTGGCCAACGCGATCGCGGCGGGGTACCTGGTGCTGTCCCTCCCCTTCTCCGCCGTCGTCGTCCTCCGCCCCCAGGCCATCGGCTTGCGC
                      agctgac  putative branch site (score: 3)
                                            cttgctt  putative PPT
     ttaattaattaatgat  TA-rich tract