1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtatgtgctttttcattagctacctttagatattgtactttcgaatcccatgactaatttgctttctgtgtgcagCCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCACTTGATTTTCATCCGAACAAAGAAGACATCGTTTGTTCGTGTGATAGTG
species | Zea mays |
transcript | GRMZM2G361398_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAAT CCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCAEST: gi|21760046|gb|BQ635587.1|BQ635587
genomic: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAATgtatgtgctt ... ctgtgtgcagCCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCA
EST: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAAT CCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCAEST: gi|211173100|gb|FL062289.1|FL062289
genomic: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAATgtatgtgctt ... ctgtgtgcagCCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCA
EST: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAAT CCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCAEST: gi|211173101|gb|FL062290.1|FL062290
genomic: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAATgtatgtgctt ... ctgtgtgcagCCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCA
EST: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAAT CCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCAEST: gi|31358706|gb|CD443063.1|CD443063
genomic: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAATgtatgtgctt ... ctgtgtgcagCCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCA
EST: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAAT CCAGATTATTCGCTCCGCACTTTTACAGGTCATTCAGCATCTGTCATGTCA
genomic: TTGCCACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGACGCTGACAATgtatgtgctt ... ctgtgtgcagCCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCA
tacctttagatattgtactttcgaatcccatgactaatttgctttctgtgtgcagCCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCACTTGATTTTCATCCGAACAAAGAAGACATCGTTTGTTCGTGTGATAGTG
gactaat putative branch site (score: 2)
tttgctttct CT-rich tract
ttagatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgctttttcattagctacctttagatattgtactttcgaatcccatgactaatttgctttctgtgtgcagCCAGATTATTCGCTACGCACTTTTACAGGTCATTCAGCATCTGTCATGTCACTTGATTTTCATCCGAACAAAGAAGACATCGTTTGTTCGTGTGATAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG