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gtatggatagtagggaatttaatttagtcatccaccacaaacaacctacaatcaattgaggatatctgtgtacaatgcagtctcttctttttcattctctttatgagttatcgcaatgttgtatgtgtgatataccgcagTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG
species | Zea mays |
transcript | GRMZM2G351160_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTGCTTCACAG TTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTEST: gi|6056866|gb|AW091271.1|AW091271
genomic: GTGCTTCACAGgtatggatag ... tataccgcagTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTT
EST: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTAAAAAGTGCTTCACAG TTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTEST: gi|78114120|gb|DV532509.1|DV532509
genomic: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTAAAAAGTGCTTCACAGgtatggatag ... tataccgcagTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTT
EST: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTAAAAAGTGCTTCACAG TTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTEST: gi|76020392|gb|DT947562.1|DT947562
genomic: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTAAAAAGTGCTTCACAGgtatggatag ... tataccgcagTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTT
EST: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTAAAAAGTGCTTCACAG TTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTEST: gi|148938634|gb|EC882965.2|EC882965
genomic: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTAAAAAGTGCTTCACAGgtatggatag ... tataccgcagTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTT
EST: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCTTCTAAAAAGTGCTTCACAG TTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTEST: gi|50331223|gb|CO526349.1|CO526349
genomic: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTAAAAAGTGCTTCACAGgtatggatag ... tataccgcagTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTT
EST: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTAAAAAGTGCTTCACAG TTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTT
genomic: TTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTAAAAAGTGCTTCACAGgtatggatag ... tataccgcagTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTT
tctttttcattctctttatgagttatcgcaatgttgtatgtgtgatataccgcagTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG
tctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggatagtagggaatttaatttagtcatccaccacaaacaacctacaatcaattgaggatatctgtgtacaatgcagtctcttctttttcattctctttatgagttatcgcaatgttgtatgtgtgatataccgcagTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG