Sequence
atgc intronic sequence ATGC exonic sequencegttgtttgcttgtttaggttcagacaccccttgattttctcccctactatgttgacttaagtggactcccatgcagGAAACAAATGCAATATGCTCAAATGGATGTAGGATTGCCAAATGCATGCGAGAATATTTTATATACAAAAAGAATTACAGATCTGCCATTAATTCTATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G346278_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os02g40450.1 (Oryza sativa), 3'ss of exon 19
gttgtttgcttgtttaggttcagacaccccttgattttctcccctactatgttgacttaagtggactccc--------atgcagGAAACAAATGCAATATGCTCAAATGGATGTAGGATTGCCAAATGCATGCGAGAATATTTTATATACAAAAAGAATTACAGATCTGCCATTAATTCTATGA
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gtaatttgtttgtccagttcaaaataccatttgattttgtcacctattcttttgacatattttaatttttgcgatttgatgcagGAAATGAATTCAATATGCTCAAATGGATGCAGGGTTGCCAAATGCATGAGAGAATATTTTATATACAAAAAGAATTACAAGTCTGCCATAAGTTCTATGC
upper sequence: GRMZM2G346278_T02 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA16G07850.1 (Glycine max), 3'ss of exon 18
gttgtttgcttgtttaggttcagacaccccttgattttctcccctactatgttg-acttaagtggactc--ccatgcagGAAACAAATGCAATATGCTCAAATGGATGTAGGATTGCCAAATGCATGCGAGAATATTTTATATACAAAAAGAATTACAGATCTGCCATTAATTCTATGA
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-gtgttgcattgtaaaatcattattttttgtagatcaacattcttatatctttgtgattaagtaaactcgatgccacagGACATGAATTCTATATGCTCAAATGGATGTAGAATTGCAAAATGCTTGAAAGACTATTTTGTTTATAAAAGGAATTACAAAGGAACTGTGAATTCAGCCC
upper sequence: GRMZM2G346278_T02 (Zea mays), 3'ss of exon 15
lower sequence: Vv14s0066g00880.t01 (Vitis vinifera), 3'ss of exon 18
----------gttgtttgcttgtttag-gttcagacaccccttgattttctcccctactatgttgacttaagtggactcccatgcagGAAACAAATGCAATATGCTCAAATGGATGTAGGATTGCCAAATGCATGCGAGAATATTTTATATACAAAAAGAATTACAGATCTGCCATTAATTCTATGA
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gtctcaacttcacaatacattgtctattattctaatgtgcct--aataaagcttatgaaattctgagcttc-tggatgtgc-tatagGATGCAAATGCTATATGCTCAAATGGGTGTAGAATTGCTAAGTGCATGAAAGAGTACTTCATTTACAAAAAGAGTTATAAAGGAGCTTTGAACTCAATCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agacaccccttgattttctcccctactatgttgacttaagtggactcccatgcagGAAACAAATGCAATATGCTCAAATGGATGTAGGATTGCCAAATGCATGCGAGAATATTTTATATACAAAAAGAATTACAGATCTGCCATTAATTCTATGA
tgttgac putative branch site (score: 3)
ctcccat putative PPT
ttgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtttgcttgtttaggttcagacaccccttgattttctcccctactatgttgacttaagtggactcccatgcagGAAACAAATGCAATATGCTCAAATGGATGTAGGATTGCCAAATGCATGCGAGAATATTTTATATACAAAAAGAATTACAGATCTGCCATTAATTCTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA