1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ttgctaaatttagatagtgtttttgttgcactggaagacagtgtacttatattgcatagtgaggaatatgtcatatgaatctaggtgggcttttatacagAATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGTTCCCTACCATAGAGGCGGAAAGAGGATACATGTTGGAGTGCAG
species | Zea mays |
transcript | GRMZM2G318860_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGCCGGCAGATGTTCAATATTTTTCATCCTTTTGACCCTGTAGCATACAG AATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGTEST: gi|78075263|gb|DV503697.1|DV503697
genomic: TGCCGGCAGATGTTCAATATTTTTCATCCTTTTGACCCTGTAGCATACAGgtttgtagtt ... ttttatacagAATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGT
EST: TGCCGGCAGATGTTCAATATTTTTCATCCTTTTGACCCTGTAGCATACAG AATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGTEST: gi|71767650|gb|DR965587.1|DR965587
genomic: TGCCGGCAGATGTTCAATATTTTTCATCCTTTTGACCCTGTAGCATACAGgtttgtagtt ... ttttatacagAATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGT
EST: TGCCGGCAGATGTTCAATATTTTTCATCCTTTTGACCCTGTAGCATACAG AATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGTEST: gi|211270821|gb|FL023496.1|FL023496
genomic: TGCCGGCAGATGTTCAATATTTTTCATCCTTTTGACCCTGTAGCATACAGgtttgtagtt ... ttttatacagAATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGT
EST: TTTGACCCTGTAGCATACAG AATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGT
genomic: TTTGACCCTGTAGCATACAGgtttgtagtt ... ttttatacagAATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGT
cttatattgcatagtgaggaatatgtcatatgaatctaggtgggcttttatacagAATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGTTCCCTACCATAGAGGCGGAAAGAGGATACATGTTGGAGTGCAG
cttttat CT-rich tract
ttttataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctaaatttagatagtgtttttgttgcactggaagacagtgtacttatattgcatagtgaggaatatgtcatatgaatctaggtgggcttttatacagAATTGAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGTTCCCTACCATAGAGGCGGAAAGAGGATACATGTTGGAGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
ttgctaa
- - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - attgcat