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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaacctccaagactttacaggctcacagcaattgtctatcttgatggagttcgtacttaacctataaaaaaccagtggttcgtcttttttttctttctaatctcgttcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG

Basic information

species Zea mays
transcript GRMZM2G304362_T01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 3'ss of exon 15
--------------gtatggaacc----tccaagactttaca-ggctcacagcaattgtctatct---------tgatggagt----tcgtacttaacctataaaaaaccagtggttcgtcttttttttctttctaatctcgttcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG
               | || || |    |||   ||| ||    || || |   ||| | ||| |         |||   ||       ||  |||   | |       ||  |||       |        | | |||| | | |||   |||||||||||||||| ||||| |||||||| |||||||| |||||||| || |||||||||||||| |||||  | ||| ||||||  |||||       
gtattattaaggctatgtgaaagcatattcctgaactctatgcagcccatatttattctgtatttgtcatgccatgaaaaagaactgctgtctttagattgtgtttttgcaa-ggtctacaagtaaacatggtttcatcttggttgat-ttagGGCCTGAAAACTGGGATGTATTATCTACGAACACGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGCCCTTTTGAAGGCCAATGGA------

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 15
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 15
gtatggaacctccaagactttacaggctcacagcaattgtctatcttgatggagttcgtacttaacctataaaa-aaccagtggttcgtctt---ttttttctttctaatctcgttcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG
                    ||    ||     || || |   |  ||||| |   |     |     |||||            || ||||   || |||||| ||  ||  |  | |    ||||||||||||| |||||||||||||||||  |||| ||||| |||||||| ||||| || || || || ||| |  ||||  ||               
-------------------gtatcaacttctttcacttatgcttgatgatgcatagctgtaatggttcataaagtggtttactaatcttcttatgttgtttcttcctgttcatggac-acaaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAG---------------

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 15
lower sequence: EFJ14283 (Selaginella moellendorffii), 3'ss of exon 14
gtatggaacctccaagactttacaggctcacagcaattgtctatcttgatggagttcgtacttaacctataaaaaaccagtggttcgtcttttttttctttctaatctcgttcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG
                                                         |||   |  ||  |  | |  || | ||  ||| |   |   ||| |  |    |  ||  |||||||| || ||||| ||||||||||||||  | | ||||||||| || || ||||||||||| || |||||  |     | |||               
---------------------------------------------------------gtaaggacact-cagcatattagcgttt--tctatgcctgtcttcaa--cgaaattaatttcagGGCCTAAAGACTGGTATGTACTATCTACGATCGCAAGCTGCTGCGGACGCTATCAAGTTCACTGTCGATACGGCCTCGTTAAAG---------------

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 15
lower sequence: EFJ20157 (Selaginella moellendorffii), 3'ss of exon 14
gtatggaacctccaagactttacaggctcacagcaattgtctatcttgatggagttcgtacttaacctataaaaaaccagtggtt---cgtcttttttttctttcta-atctcgttcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGG-AGAATGGGAACGGG
                                                                   ||   | |  |||    |   ||| || | |  || |||  | |    |  ||  |||||||| || ||||| ||||||||||||||  | | ||||||||| || || ||||||||||| || |||||  |     | |||| || ||   |     
------------------------------------------------------------------gtaaggacagtcagcatattagcgttttctatgcctgtcttcaacgaaattaatttcagGGCCTAAAGACTGGTATGTACTATCTACGATCGCAAGCTGCTGCGGACGCTATCAAGTTCACTGTCGATACGGCCTCGTTAAAGGTAGGATTCTATTTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32932369|gb|CF037181.1|CF037181
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGT
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGT
EST: gi|32934636|gb|CF039448.1|CF039448
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTAC
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTAC
EST: gi|24769909|gb|CA405038.1|CA405038
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|5762221|gb|AI967269.1|AI967269
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|33093398|gb|CF053392.1|CF053392
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTA
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTA
EST: gi|6827647|gb|AW331290.1|AW331290
EST:     TCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: TCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|6194858|gb|AW146962.1|AW146962
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCCACACGAGCTGCTGCTGATGC
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGC-ACACGAGCTGCTGCTGATGC
EST: gi|28931227|gb|CB334588.1|CB334588
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|13150171|gb|BG320493.1|BG320493
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|60672569|gb|DN475271.1|DN475271
EST:     AAGCAAACTTTGGGAAGCCGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|32907431|gb|CF012244.1|CF012244
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|32934774|gb|CF039586.1|CF039586
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGT
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGT
EST: gi|29577171|gb|CB617283.1|CB617283
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|32933139|gb|CF037951.1|CF037951
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGT
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGT
EST: gi|32945530|gb|CF050349.1|CF050349
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTAC
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTAC
EST: gi|32934883|gb|CF039695.1|CF039695
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGT
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGT
EST: gi|32933143|gb|CF037955.1|CF037955
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGT
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGT
EST: gi|6022688|gb|AW067616.1|AW067616
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|31356810|gb|CD441167.1|CD441167
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|32931555|gb|CF036367.1|CF036367
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTAC
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTAC
EST: gi|91053675|gb|EB164093.1|EB164093
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATTTACGCACCCGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|211165342|gb|FL103230.1|FL103230
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|211165339|gb|FL103227.1|FL103227
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|7227815|gb|AW566456.1|AW566456
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|5081116|gb|AI738162.1|AI738162
EST:     TTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: TTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|29545140|gb|CB605318.1|CB605318
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|33094392|gb|CF054386.1|CF054386
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGT
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGT
EST: gi|32935070|gb|CF039882.1|CF039882
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGT
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGT
EST: gi|4646500|gb|AI491639.2|AI491639
EST:     TTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCCCACGAGCTGCTGCTGATGCG
genomic: TTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|31405947|gb|CD484679.1|CD484679
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|32932471|gb|CF037283.1|CF037283
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|211402194|gb|FL458653.1|FL458653
EST:     TTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: TTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|60343761|gb|DN210734.1|DN210734
EST:     CTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: CTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|211165344|gb|FL103232.1|FL103232
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCG
EST: gi|32932118|gb|CF036930.1|CF036930
EST:     AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTAC
genomic: AAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 348

CCGCGGATGCTACATCGACCAAAGCCAGAGCCTCAATGTCCACATGGAGCAAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 101

CCGCGGATGCTACATCGACCAAAGCCAGAGCCTCAATGTCCACATGGAGCAAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 122

CCGCGGATGCTACATCGACCAAAGCCAGAGCCTCAATGTCCACATGGAGCAAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 55

CCGCGGATGCTACATCGACCAAAGCCAGAGCCTCAATGTCCACATGGAGCAAGCAAACTTTGGGAAGCTGACGTCTCTTCACTTCCATGCTTGGTCCAAGgtatggaacc ... tcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctataaaaaaccagtggttcgtcttttttttctttctaatctcgttcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG
                                 ttctaat  putative branch site (score: 55)
                 ttcgtcttttttttct  CT-rich tract
                       ttttttttctttctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggaacctccaagactttacaggctcacagcaattgtctatcttgatggagttcgtacttaacctataaaaaaccagtggttcgtcttttttttctttctaatctcgttcgatgccagGGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA