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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttaacagactagtattttgctttgtacctaattcatttaggatattgttgttttacatatgctttggttcatttgttgtagTTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCGGGACTCTATCTACGATGAAATCTCATAGCAATGCACCTGCAAAATCAAA

Basic information

species Zea mays
transcript GRMZM2G178822_T02
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015254|gb|CO444003.1|CO444003
EST:     GCTTCCTGTCCGTCGGAAATCTTCATCGCTTCCTAAAACACCTCCATGTG                         TTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG
genomic: GCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTGgttagttaac ... tttgttgtagTTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG
EST: gi|67022700|gb|CO451449.1|CO451449
EST:     GCTTCCTGTCCGTCGGAAATCTTCATCGCTTCCTAAAACACCTCCATGTG                         TTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG
genomic: GCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTGgttagttaac ... tttgttgtagTTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG
EST: gi|60352824|gb|DN219797.1|DN219797
EST:     GCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTG                         TTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCT
genomic: GCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTGgttagttaac ... tttgttgtagTTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCT
EST: gi|71311110|gb|DR791868.1|DR791868
EST:     GCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTG                         TTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG
genomic: GCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTGgttagttaac ... tttgttgtagTTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG
EST: gi|28188021|gb|CB179631.1|CB179631
EST:     GCTTCCTGTCCGTCTGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTG                         TTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG
genomic: GCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTGgttagttaac ... tttgttgtagTTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG
EST: gi|6269998|gb|AW157969.1|AW157969
EST:     CTGGCCTGTCCGTCGGAAATCTTCATCGCTTCCTAAAACACCTCCATGTG                         TTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG
genomic: CT-TCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTGgttagttaac ... tttgttgtagTTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctaattcatttaggatattgttgttttacatatgctttggttcatttgttgtagTTGGATCAAAGAGAATTTCCGAGAACAGTGTTGCTAGAAGATTCTCGACCGGGACTCTATCTACGATGAAATCTCATAGCAATGCACCTGCAAAATCAAA
 acctaat  putative branch site (score: 3)
                                         ttcattt  putative PPT
               atattgttgtttta  TA-rich tract