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gtgagcagcagtctgcatcatggcagccccagctgtcacactatagaagagaactgttaccatcttcgctgacgattctatgcccttgtgcacagGTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGTTCCTGCAGTACATGCGCACTCGGGGAATCAAGCCACAGCGGGCTCCGGG
species | Zea mays |
transcript | GRMZM2G176995_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GATCGCGACACGCGACATCGTCCAGTTTGTTCCCATGAGGGAAGTCCAAG GTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGTEST: gi|17930793|gb|BM267753.1|BM267753
genomic: GATCGCGACACGCGACATCGTCCAGTTTGTTCCCATGAGGGAAGTCCAAGgtgagcagca ... ttgtgcacagGTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGT
EST: GATCGCGACACGCGACATCGTCCAGTTTGTTCCCATGAGGGAAGTCCAAG GTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGTEST: gi|71430793|gb|DR811843.1|DR811843
genomic: GATCGCGACACGCGACATCGTCCAGTTTGTTCCCATGAGGGAAGTCCAAGgtgagcagca ... ttgtgcacagGTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGT
EST: GATCGCGACACGCGACATCGTCCAGTTTGTTCCCATGAGGGAAGTCCAAG GTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGTEST: gi|76011898|gb|DT939068.1|DT939068
genomic: GATCGCGACACGCGACATCGTCCAGTTTGTTCCCATGAGGGAAGTCCAAGgtgagcagca ... ttgtgcacagGTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGT
EST: GATCGCGACACGCGACATCGTCCAGTTTGTTCCCATGAGGGAAGTCCAAG GTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGT
genomic: GATCGCGACACGCGACATCGTCCAGTTTGTTCCCATGAGGGAAGTCCAAGgtgagcagca ... ttgtgcacagGTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGT
ctatagaagagaactgttaccatcttcgctgacgattctatgcccttgtgcacagGTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGTTCCTGCAGTACATGCGCACTCGGGGAATCAAGCCACAGCGGGCTCCGGG
cgctgac putative branch site (score: 43)
tgccctt putative PPT
attctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagcagtctgcatcatggcagccccagctgtcacactatagaagagaactgttaccatcttcgctgacgattctatgcccttgtgcacagGTGGCGAGATCTCCGTCGTGCAATCCCTTCTGGAGGAACTGCCCGGTCAGTTCCTGCAGTACATGCGCACTCGGGGAATCAAGCCACAGCGGGCTCCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG