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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatattatagacatatttggctcgtacattgagaagttaaactgtgccaaaaatgttttttccccacgcaattcgacagatatttaccaaccagtagctcaccgtggcgttttccagGTTGAAGTGTTCCATCTCAAGCAGAGGCTGCAGATACTGGAGGGAAGATCAGGAACACCCAACAAACAACCGCTATAGGCTATAGTGGTCACATTTCTAC

Basic information

species Zea mays
transcript GRMZM2G174830_T01
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71433191|gb|DR814241.1|DR814241
EST:     CCACTCGTAGAGTTTTAGCAGGGGAACAGTCGCGCGCGTTCCAGCTCCAG                         GTTGAAGTGTTCCATCTCAAGCAGAGGCTGCAGATACTGGAGGGAAGATCA
genomic: CCACTCGTAGAGTTTTAGCAGGGGAACAGTCGCGCGCGTTCCAGCTCCAGgtactatatt ... cgttttccagGTTGAAGTGTTCCATCTCAAGCAGAGGCTGCAGATACTGGAGGGAAGATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccacgcaattcgacagatatttaccaaccagtagctcaccgtggcgttttccagGTTGAAGTGTTCCATCTCAAGCAGAGGCTGCAGATACTGGAGGGAAGATCAGGAACACCCAACAAACAACCGCTATAGGCTATAGTGGTCACATTTCTAC
                                 agctcac  putative branch site (score: 3)
                                             cgttttcc  putative PPT
               agatattta  TA-rich tract