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...taatacattaacactacacgcacgcccaaaattcagactgcacgctattaaattatgtttatttttcttttctctaaccttaacatatcctttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCTGATGAAGAGGATAACTTTATAGAGCAGACTTCTGAGAGTCTTGATCATC
species | Zea mays |
transcript | GRMZM2G173868_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCTEST: gi|76281154|gb|DV020722.1|DV020722
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCTEST: gi|6445502|gb|AW179420.1|AW179420
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: CCAGTCACTATTCAATG-CCAATGTGTTGTTTACGCCAGGTTACATCAAG GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCTEST: gi|71445065|gb|DR826115.1|DR826115
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCTEST: gi|74239609|gb|DT647523.1|DT647523
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: ATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCTEST: gi|50338539|gb|CO533665.1|CO533665
genomic: ATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
tattaaattatgtttatttttcttttctctaaccttaacatatcctttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCTGATGAAGAGGATAACTTTATAGAGCAGACTTCTGAGAGTCTTGATCATC
tatccttttt CT-rich tract
aattatgtttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatacattaacactacacgcacgcccaaaattcagactgcacgctattaaattatgtttatttttcttttctctaaccttaacatatcctttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCTGATGAAGAGGATAACTTTATAGAGCAGACTTCTGAGAGTCTTGATCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - -aacacta
- - - - - - - - cacgcac
- - - - - - - - - - - - - - - - - - - tgcacgc