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...ttcctacattgtggaaagtgcgaaaatagtgttgtattccttctgatgtgagtgcatttgtattgtttctgtttcttgcaactactacgcaaatatccagGGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCCGTCGACGCCAGGGCTGGACTGGGAAGTCAGCAGCGGAAGCCTGATCCAT
species | Zea mays |
transcript | GRMZM2G173777_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTG GGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCAGGCAAAATCCEST: gi|13490851|gb|BG517615.1|BG517615
genomic: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTGgtaaggtcat ... aaatatccagGGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCC
EST: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTG GGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCCEST: gi|33093013|gb|CF053007.1|CF053007
genomic: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTGgtaaggtcat ... aaatatccagGGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCC
EST: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACCG GGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCCEST: gi|71596082|gb|DR906833.1|DR906833
genomic: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTGgtaaggtcat ... aaatatccagGGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCC
EST: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTG GGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCAGGCAAAATCCEST: gi|211237414|gb|FL451441.1|FL451441
genomic: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTGgtaaggtcat ... aaatatccagGGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCC
EST: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTG GGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCAGGCAAAATCCEST: gi|211130864|gb|FL130500.1|FL130500
genomic: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTGgtaaggtcat ... aaatatccagGGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCC
EST: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTG GGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACC
genomic: GCAATGTGGGCAACCGCATTCTACGCAACATGGGGTGGCAGGAGGGACTGgtaaggtcat ... aaatatccagGGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACC
atgtgagtgcatttgtattgtttctgtttcttgcaactactacgcaaatatccagGGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCCGTCGACGCCAGGGCTGGACTGGGAAGTCAGCAGCGGAAGCCTGATCCAT
ttctgat putative branch site (score: 58)
atttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctacattgtggaaagtgcgaaaatagtgttgtattccttctgatgtgagtgcatttgtattgtttctgtttcttgcaactactacgcaaatatccagGGTCTCGGAAAGGATGCCAGCGGTATCAAGGAACCAGTCCTGGCAAAATCCGTCGACGCCAGGGCTGGACTGGGAAGTCAGCAGCGGAAGCCTGATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- cctacat
- - - - - - - - - - -gaaaatag
- - - - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - ccttctg
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt