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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttagtattgataatgctgtattatcgtgcatgtaatgcctgtcttttgctgtgattatctcagtgttgaaacaacagcattttacaaattttgtccagGTTGCGTCTTTGAAAGACACAATTTTGCGCAAAGATATGGAAATAGAGCAGATCCAGGTCATCAAAGACAAAGTAAAATCCCCAAATTTGTTGTTAGATA

Basic information

species Zea mays
transcript GRMZM2G173700_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173700_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 3'ss of exon 18
ttttagtattgataatgctgtattatcgtgcatgtaatgcctgtcttttgctgtgattatctcagtgttgaaac----aacagcattttacaaattttgtccagGTTGCGTCTTTGAAAGACACAATTTTGCGCAAAGATATGGAAATAGAGCAGATCCAGGTCATCAAAGACAAAGTAAAATCCCCAAATTTGTTGTTAGATA
   |   | |||  |     |  | |  |      ||| |||   |||| || | | ||| |     |   |||    ||   || || ||| |||||||||||||||| |||||||||||||| ||| | || ||||||| |||||| |||||| ||||  |||| ||||||||||| ||||| |||| |||     | ||||
---tgccaatga-gacatgtttctgttataatgacaattccttctttttactataaatattttgtcctcccaacttgaaaagtcacttcacatattttgtccagGTTGCATCTTTGAAAGACACTATTGTACGAAAAGATACGGAAATTGAGCAGCTCCAACTCATGAAAGACAAAGTCAAATCGCCAAGTTTTGCAGTCGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353200|gb|CD437557.1|CD437557
EST:     CTGCTAGAAGTAACAAGGAGGGAAAAGATATAAAAGAGCTATTGGAACAG                         GTTGCGTCTTTGAAAGACACAATTTTGCGCAAAGATATGGAAATAGAGCAG
genomic: CTGCTAGAAGTAACAAGGAGGGAAAAGATATAAAAGAGCTATTGGAACAGgttcttgtac ... ttttgtccagGTTGCGTCTTTGAAAGACACAATTTTGCGCAAAGATATGGAAATAGAGCAG
EST: gi|31354629|gb|CD438986.1|CD438986
EST:     CTGCTAGAAGTAACAAGGAGGGAAAAGATATAAAAGAGCTATTGGAACAG                         GTTGCGTCTTTGAAAGACACAATTTTGCGCAAAGATATGGAAATAGAGCAG
genomic: CTGCTAGAAGTAACAAGGAGGGAAAAGATATAAAAGAGCTATTGGAACAGgttcttgtac ... ttttgtccagGTTGCGTCTTTGAAAGACACAATTTTGCGCAAAGATATGGAAATAGAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgctgtgattatctcagtgttgaaacaacagcattttacaaattttgtccagGTTGCGTCTTTGAAAGACACAATTTTGCGCAAAGATATGGAAATAGAGCAGATCCAGGTCATCAAAGACAAAGTAAAATCCCCAAATTTGTTGTTAGATA
                                             ttttgtcc  CT-rich tract
                                   attttacaaattttgt  TA-rich tract