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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttgaccttcctggccgcatcttgttttcgttgtttgaccgagttccatgcagctgctgacgacttcccatatctgcagGCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGATGACATGTGTCCTACAAGCACTCAGTTCTTTGAAATGCATGTTGATAATC

Basic information

species Zea mays
transcript GRMZM2G168449_T01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168449_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os07g10550.1 (Oryza sativa), 3'ss of exon 16
gtaatgttgaccttcctggccgcatcttgttttcgttgtttgacc--gagttccatg-------------------------cagctgctgacgacttc-ccatatctgcagGCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGATGACATGTGTCCTACAAGCACTCAGTTCTTTGAAATGCATGTTGATAATC
|||||||| | ||||      |  || |   ||| |||||||| |  ||| || |||                         || | ||||| |||||| |  | |||||||||||||||| ||| |||||  |  ||||||||||| |||||| ||||||||||||||||||| ||||||||||| || ||||||     || ||||||  
gtaatgttcatcttctcaatggtctcctaaattcattgtttgaacatgagctcaatgaaactgctgtattcgctaaaaagtgcaaccgctgatgacttctctgtttctgcagGCGGAGTTGAATAGTGTGAAGAATCAACTGCTAAGCGATTTCTCTCCCGATGACATGTGTCCAACAAGCACTCATTTTTTTGAAGCAACTGGTGATAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87154189|gb|DY398978.1|DY398978
EST:     GAGAATGCATAGTCTCCACAATCATGAACAACATTGCAAATATGATGGAT                         GCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGAT
genomic: GAGAATGCATAGTCTCCACAATCATGAACAACATTGCAAATATGATGGATgtaatgttga ... atatctgcagGCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGAT
EST: gi|22545084|gb|BU097443.1|BU097443
EST:     GAGAATGCATAGTCTCCACAATCATGAACAACATTGCAAATATGATGGAT                         GCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGAT
genomic: GAGAATGCATAGTCTCCACAATCATGAACAACATTGCAAATATGATGGATgtaatgttga ... atatctgcagGCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGAT
EST: gi|26455539|gb|CA827122.1|CA827122
EST:     GAGAATGCATAGTCTCCACAATCATGAACAACATTGCAAATATGATGGAT                         GCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGAT
genomic: GAGAATGCATAGTCTCCACAATCATGAACAACATTGCAAATATGATGGATgtaatgttga ... atatctgcagGCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGAT
EST: gi|78085280|gb|DV513673.1|DV513673
EST:     GAGAATGCATAGTCTCCACAATCATGAACAACATTGCAAATATGATGGAT                         GCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGAT
genomic: GAGAATGCATAGTCTCCACAATCATGAACAACATTGCAAATATGATGGATgtaatgttga ... atatctgcagGCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcgttgtttgaccgagttccatgcagctgctgacgacttcccatatctgcagGCGGAGTTGCATAATGTGAGAAGCCAACTGCTAAGTGATTTCACTCCCGATGACATGTGTCCTACAAGCACTCAGTTCTTTGAAATGCATGTTGATAATC
                              tgctgac  putative branch site (score: 2)
                                       cttcccat  putative PPT